Job Description P76594 Confidence 100.00% Date Thu Jan 5 12:24:56 GMT 2012 Rank 2 Aligned Residues 421 % Identity 14% Template c3dmyA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein fdra; PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli Resolution 2.07 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		V	L	G	V	L	A	W	P	D	I	A	S	L	P	F	T	P	D	L	A	V	L	C	T	N	A	S	R	N	L	A	L	L	E	E	L	G	E	K	G	C	K	T	C	I	I	L	S	A	P	A	S	Q	.	.	H	E	D	L	R	A	C	A	L	R	H	N	M	R	L	L	G	P	N	S	L	G	L	L	A
Query Conservation																																																							.	.
Alig confidence																																												.											.	.
Template Conservation																																												.
Template Sequence		L	T	Q	V	R	R	W	D	S	A	C	Q	K	L	P	D	A	N	L	A	L	I	S	V	A	G	E	Y	A	A	E	L	A	N	Q	A	L	D	R	N	L	N	.	V	X	X	F	S	D	N	V	T	L	E	D	E	I	Q	L	K	T	R	A	R	E	K	G	L	L	V	X	G	P	D	C	G	T	S	X	I
Template Known Secondary structure						S	S								S	T	T								S															T	T			.																							T	T						S	S
Template Predicted Secondary structure																																												.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.
Query Sequence		P	W	Q	G	L	N	A	S	F	S	P	V	P	I	K	R	G	K	L	A	F	I	S	Q	S	A	A	V	S	N	T	I	L	D	W	A	Q	Q	R	K	M	G	F	S	Y	F	I	A	L	G	D	S	.	.	.	.	.	.	L	D	I	D	V	D	E	L	L	D	Y	L	A	R	D	S	K	T	S	A	I	L
Query Conservation																																																						.	.	.	.	.	.
Alig confidence												.	.	.																																								.	.	.	.	.	.
Template Conservation												.	.	.
Template Sequence		A	G	T	P	L	A	F	A	N	V	.	.	.	X	P	E	G	N	I	G	V	I	G	A	S	G	T	G	I	Q	E	L	C	S	Q	I	A	L	A	G	E	G	I	T	H	A	I	G	L	G	G	R	D	L	S	R	E	V	G	G	I	S	A	L	T	A	L	E	X	L	S	A	D	E	K	S	E	V	L	A
Template Known Secondary structure		T	T					S				.	.	.											S		S													T	T											T	T	T	T	S	T	T	T	T	T												T		T	T
Template Predicted Secondary structure												.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		L	Y	L	E	Q	L	S	D	A	R	R	F	V	S	A	A	R	S	A	S	R	N	K	P	I	L	V	I	K	S	G	R	S	P	A	A	Q	.	.	.	.	R	L	L	N	T	T	A	G	M	D	P	A	W	D	A	A	I	Q	R	A	G	L	L	R	V	Q	D	T	H	E	L	F	S	A	V	E	T	L	S
Query Conservation																																							.	.	.	.
Alig confidence																																							.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	S	K	P	P	A	E	A	V	R	L	K	I	V	N	A	X	K	A	T	G	K	P	T	V	A	L	F	L	G	Y	T	P	A	V	A	R	D	E	N	V	W	F	A	S	S	L	D	E	A	A	R	L	A	C	L	L	S	R	V	T	A	R	R	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S																			S							T	T				S	S	S			T	T					S	S																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.					.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		H	M	R	P	L	R	G	D	R	L	M	I	I	S	N	G	A	A	P	A	A	L	A	L	D	A	L	W	S	R	N	G	K	L	A	T	L	S	E	E	T	C	Q	K	L	R	D	A	L	P	E	H	V	A	I	S	N	P	L	D	L	R	D	D	A	.	.	.	.	S	S	E	H	Y	I	K	T	L	D	I
Query Conservation																																																																			.	.	.	.
Alig confidence		.	.	.	.																																																														.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	I	A	P	V	S	S	G	F	I	C	G	L	Y	T	G	G	T	L	A	A	E	A	A	G	L	L	A	G	H	L	G	V	E	T	H	Q	H	G	X	X	L	D	A	D	S	H	Q	I	I	D	L	G	D	D	F	Y	T	V	G	R	P	H	P	X	I	D	P	T	L	R	N	Q	L	I	A	D
Template Known Secondary structure		.	.	.	.					S									S																T	T					G	G	G						T	T						T	T	S					T	T	S			T	T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		358	.	360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.					410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure													.	.															.																												.	.	.	.
Query SS confidence													.	.															.																												.	.	.	.
Query Sequence		L	L	H	S	Q	D	F	D	A	L	M	.	.	V	I	H	S	P	S	A	A	A	P	A	T	E	S	.	A	Q	V	L	I	E	A	V	K	H	H	P	R	S	K	Y	V	S	L	L	T	N	W	C	G	E	H	.	.	.	.	S	S	Q	E	A	R	R	L	F	S	E	A	G	L	P	T	Y	R	T	P	E
Query Conservation													.	.															.																												.	.	.	.
Alig confidence													.	.															.																												.	.	.	.
Template Conservation
Template Sequence		L	G	A	K	P	Q	V	R	V	L	L	L	D	V	V	I	G	F	G	A	T	A	D	P	A	A	S	L	V	S	A	W	Q	K	A	C	A	A	R	L	D	N	Q	P	L	Y	A	I	A	T	V	T	G	T	E	R	D	P	Q	C	R	S	Q	Q	I	A	T	L	E	D	A	G	I	A	V	V	S	S	L	P
Template Known Secondary structure		G	G	G		T	T											S	T	T	S		S																T	S		T	T	S										S		T	T	S	T	T												T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	I	T	A	F	M	H	M	V	E	Y	R	R	N	Q	K	Q	L	R	E	T	P	A	L	P	S	N	L	T	S	N	T	A	E	A	H	L	L	L	Q	Q	A	I	A	E	G	A	T	S	L	D	T	H	E	V	Q	P	I	L	Q	A	Y	G	M	N	T	L	P	T	W	I	A	S	D	S	T	E	A	V
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Sequence		E	A	T	L	L	A	A	A	L	I	H	P	L	S	H	T	P	S	L	L	E	N	V	A	V	I	N	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	S	F	A	L	.	.	E	L	Q	S	A	S	K	P	V	V	H	Y	Q	W	S	P	V	A	G	G	N	K
Template Known Secondary structure											T	S																		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.					T	T										S	S		T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.																						.	.	.	.	.	.			.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
		511	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	A	E	Q	I	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	A	R	L	L	E	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		546	.	.	.	550	.	.	.