Job Description P76594 Confidence 98.30% Date Thu Jan 5 12:24:56 GMT 2012 Rank 191 Aligned Residues 181 % Identity 17% Template c2pvpB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori Resolution 2.40 Å

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		413	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		E	A	R	R	L	F	S	E	A	G	L	P	T	Y	.	R	T	P	E	G	T	I	T	A	F	M	H	M	V	E	Y	R	R	N	Q	K	Q	L	R	E	T	P	A	L	P	S	N	L	T	S	N	T	A	E	A	H	L	L	L	Q	Q	A	I	A	E	G	A	T	S	L	D	T	H	E	V	Q	P	I	L	Q
Query Conservation																.
Alig confidence																.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	A	S	L	L	E	F	Y	R	I	A	F	I	G	P	R	I	E	A	S	V	L	S	Y	N	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	K	L	Y	A	K
Template Known Secondary structure										T	T					S											S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																																														.	.	.	.	.	.	.
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.		.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		A	Y	G	M	N	T	L	P	T	W	I	A	S	D	S	T	E	A	V	H	I	.	A	E	Q	I	G	Y	P	V	A	L	K	L	R	S	P	D	I	P	H	K	S	E	V	Q	G	V	M	L	Y	L	R	T	A	N	E	V	Q	Q	A	A	N	A	I	F	D	R	V	K	M	A	W	P	Q	A	R	V	H	G
Query Conservation																							.
Alig confidence																							.													.	.	.	.	.												.																					.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.												.																					.	.	.	.	.	.	.	.	.
Template Sequence		D	L	G	I	K	T	L	D	Y	V	L	L	N	E	K	N	R	A	N	A	L	D	L	M	N	F	N	F	P	F	I	V	K	P	.	.	.	.	.	S	N	A	G	S	S	L	G	V	N	V	.	V	K	E	E	K	E	L	I	Y	A	L	D	S	A	F	E	Y	S	K	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T		B									T	T	T						T	T					S							.	.	.	.	.	S	S		S	T	T	T	T				.			S	T												T	T		S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.												.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		571	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	V	Q	S	M	A	N	R	A	G	A	Q	E	L	R	V	V	V	E	H	D	P	V	F	G	P	L	I	M	L	G	E	G	G	V	E	W	R	P	E	D	Q	A	V	V	A	L	P	P	L	N	M	N	L	A	R	Y	L	V	I	Q	G	I	K	S	K	K	I	R	A	R	S	A	L	R	P	L	D	V
Query Conservation
Alig confidence									.	.																											.	.	.	.	.	.	.	.	.
Template Conservation									.	.																											.	.	.	.	.	.	.	.	.
Template Sequence		V	L	I	E	P	F	I	.	.	Q	G	V	K	E	Y	N	L	A	G	C	K	I	K	K	D	F	C	F	S	Y	I	E	E	P	N	.	.	.	.	.	.	.	.	.	K	Q	P	K	A	S	L	S	N	A	L	E	E	Q	L	K	E	N	F	K	K	L	Y	S	D	L	F	D	G	A	I	I	R	C	D	F
Template Known Secondary structure									.	.	T	T												T	T								B		T	T	.	.	.	.	.	.	.	.	.																								T	T	T	T	T	T
Template Predicted Secondary structure									.	.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.										.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		651	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	L	S	Q	L	L	V	Q	V	S	N	L	I	V	D	C	P	E	I	Q	R	L	D	I	H	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	I	E	N	E	V	Y	L	N	E	I	N	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.				T	T									S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions