Job Description P76594 Confidence 100.00% Date Thu Jan 5 12:24:56 GMT 2012 Rank 3 Aligned Residues 271 % Identity 20% Template c2fpgA_ PDB info PDB header:ligase Chain: A: PDB Molecule:succinyl-coa ligase [gdp-forming] alpha-chain, PDBTitle: crystal structure of pig gtp-specific succinyl-coa2 synthetase in complex with gdp Resolution 2.96 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.
Predicted Secondary structure															.																																						.	.																			.	.
Query SS confidence															.																																						.	.																			.	.
Query Sequence		S	Q	R	G	L	E	A	L	L	R	P	K	S	.	I	A	V	I	G	A	S	M	K	P	N	R	A	G	Y	L	M	M	R	N	L	L	A	G	G	F	N	G	P	V	L	P	V	T	P	A	W	.	.	K	A	V	L	G	V	L	A	W	P	D	I	A	S	L	P	F	T	.	.	P	D	L	A	V	L	C
Query Conservation															.																																						.	.																			.	.
Alig confidence							.	.							.								.	.	.																		.										.	.																			.	.
Template Conservation							.	.															.	.	.																		.
Template Sequence		S	R	K	H	L	.	.	Y	V	D	K	N	T	K	V	I	C	Q	G	F	T	.	.	.	G	K	Q	G	T	F	H	S	Q	Q	A	L	E	Y	G	T	N	.	L	V	G	G	T	T	P	G	K	G	G	K	T	H	L	G	L	P	V	F	N	T	V	K	E	A	K	E	Q	T	G	A	T	A	S	V	I	Y
Template Known Secondary structure		G	G	G	G	G	.	.				T	T							T	T	T	.	.	.	S														T			.							T	T		T	T				T	T					S												S
Template Predicted Secondary structure							.	.															.	.	.																		.
Template SS confidence
		6	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		T	N	A	S	R	N	L	A	L	L	E	E	L	G	E	K	G	C	K	T	C	I	I	L	S	A	P	A	S	Q	.	.	.	H	E	D	L	R	A	C	A	L	R	H	N	M	R	L	L	G	P	N	S	L	G	L	L	A	P	W	Q	G	L	N	A	S	F	S	P	V	P	I	K	R	G	K	L	A	F	I
Query Conservation																																.	.	.
Alig confidence																																.	.	.
Template Conservation
Template Sequence		V	P	P	P	F	A	A	A	A	I	N	E	A	I	D	A	E	V	P	L	V	V	C	I	T	E	G	I	P	Q	Q	D	M	V	R	V	K	H	R	L	L	R	Q	G	K	T	R	L	I	G	P	N	C	P	G	V	I	N	P	G	E	C	K	I	G	I	M	P	G	H	I	H	K	K	G	R	I	G	I	V
Template Known Secondary structure																	T	T		S							S																T		S	S						S	S	S						T	T	T					S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.																														.	.	.	.
Query SS confidence																																			.	.																														.	.	.	.
Query Sequence		S	Q	S	A	A	V	S	N	T	I	L	D	W	A	Q	Q	R	K	M	G	F	S	Y	F	I	A	L	G	D	S	L	D	I	.	.	D	V	D	E	L	L	D	Y	L	A	R	D	S	K	T	S	A	I	L	L	Y	L	E	Q	L	S	D	A	R	.	.	.	.	R	F	V	S	A	A	R	S	A	S	R	N
Query Conservation																																			.	.																														.	.	.	.
Alig confidence																																			.	.																														.	.	.	.
Template Conservation
Template Sequence		S	R	S	G	T	L	T	Y	E	A	V	H	Q	T	T	Q	V	G	L	G	Q	S	L	C	V	G	I	G	G	D	P	F	N	G	T	D	F	T	D	C	L	E	I	F	L	N	D	P	A	T	E	G	I	I	L	I	G	E	I	G	G	N	A	E	E	N	A	A	E	F	L	K	Q	H	N	S	G	P	K	S
Template Known Secondary structure			S		S													T	T											S	S	S	S		S												T		T	T										S	S	S	S													S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.							.	.	.	.
Query SS confidence																	.	.	.							.	.	.	.
Query Sequence		K	P	I	L	V	I	K	S	G	R	S	P	A	A	Q	.	.	.	R	L	L	N	T	T	.	.	.	.	A	G	M	D	P	A	W	D	A	A	I	Q	R	A	G	L	L	R	V	Q	D	T	H	E	L	F	S	A	V	E
Query Conservation																	.	.	.							.	.	.	.
Alig confidence																	.	.	.							.	.	.	.
Template Conservation
Template Sequence		K	P	V	V	S	F	I	A	G	L	T	A	P	P	G	R	R	M	G	H	A	G	A	I	I	A	G	G	K	G	G	A	K	E	K	I	T	A	L	Q	S	A	G	V	V	V	S	M	S	P	A	Q	L	G	T	T	I	Y
Template Known Secondary structure											T	T			T	T				S	S	T	T				B	T	T	B													T	T					S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions