Job Description P76594 Confidence 97.71% Date Thu Jan 5 12:24:56 GMT 2012 Rank 215 Aligned Residues 169 % Identity 11% Template c1pk8D_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:rat synapsin i; PDBTitle: crystal structure of rat synapsin i c domain complexed to2 ca.atp Resolution 2.10 Å

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		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	C	G	E	H	S	S	Q	E	A	R	R	L	F	S	E	A	G	L	P	T	Y	R	T	P	E	G	T	I	T	A	F	M	H	M	V	E	Y	R	R	N	Q	K	Q	L	R	E	T	P	A	L	P	S	N	L	T	S	N	T	A	E	A	H	L	L	L	Q	Q	A	I	A	E	G	A	T	S	L	D	T	H
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	R	N	G	D	Y	R	S	L	V	I	G	L	Q	Y	A	G	I	P	S	V	N	S	L	H	S	V	Y	N	F	C	D	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	T	T													T	T					S								T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.					.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		E	V	Q	P	I	L	Q	A	Y	G	M	N	T	L	P	T	W	I	A	S	D	S	.	.	.	.	T	E	A	V	H	I	A	E	Q	I	G	Y	P	V	A	L	K	L	R	S	P	D	I	P	H	K	S	E	V	Q	G	V	M	L	Y	L	R	T	A	N	E	V	Q	Q	A	A	N	A	I	F	D	R	V	K
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.																			.	.	.	.	.												.
Template Conservation																																														.	.	.	.	.												.
Template Sequence		W	V	F	A	Q	M	V	R	L	H	K	K	L	G	T	E	E	F	P	L	I	D	Q	T	F	Y	P	N	H	K	E	M	L	S	S	T	T	Y	P	V	V	V	K	M	.	.	.	.	.	G	H	A	H	S	G	M	G	K	V	K	.	V	D	N	Q	H	D	F	Q	D	I	A	S	V	V	A	L	T	K	T
Template Known Secondary structure																T	T	T			B							S	S	G	G	G					S	S	S	S						.	.	.	.	.	S	S			T	T	T	T				.			S															T	S
Template Predicted Secondary structure																																														.	.	.	.	.												.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	W	P	Q	A	R	V	H	G	L	L	V	Q	S	M	A	N	R	A	G	A	Q	E	L	R	V	V	V	E	H	D	P	V	F	G	P	L	I	M	L	G	E	G	G	V	E	W	R	P	E	D	Q	A	V	V	A	L	P	P	L	N	M	N	L	A	R	Y	L	V	I	Q	G	I	K	S
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.								.	.																	.
Template Conservation			.	.	.	.	.	.	.	.	.								.	.																	.
Template Sequence		Y	.	.	.	.	.	.	.	.	.	A	T	A	E	P	F	I	.	.	D	A	K	Y	D	V	R	V	Q	K	I	G	Q	N	Y	K	.	A	Y	M	R	T	S	V	S	G	N	W	K	T	N	T	G	S	A	M	L	E	Q	I	A	M	S	D	R	Y	K	L	W	V	D	T	C	S	E	I	F
Template Known Secondary structure			.	.	.	.	.	.	.	.	.								.	.												T	T				.							S	S	S		S	S	T	T	S	S	S																				T	T	G	G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.								.	.																	.
Template SS confidence
		301										.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions