Job Description P76594 Confidence 98.52% Date Thu Jan 5 12:24:56 GMT 2012 Rank 173 Aligned Residues 245 % Identity 18% Template c1ehiB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine:d-lactate ligase; PDBTitle: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant2 leuconostoc mesenteroides Resolution 2.38 Å

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		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.																							.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	K	T	L	D	I	L	L	H	S	Q	D	F	D	A	L	M	V	I	H	S	P	S	A	A	A	P	A	T	E	S	A	Q	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	A	V	K	H	H	P	R	S	K	Y	V	S	L	L	T	N	W	C	G	E	H
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	N	F	Y	N	A	I	E	A	T	G	K	Y	E	I	I	V	F	A	I	A	Q	N	G	F	F	L	D	T	E	S	S	K	K	I	L	A	L	E	D	E	Q	P	I	V	D	A	F	M	K	T	V	D	A	S	D	P	L	A	R	I	H	A	L	K	S	A	G	D	F	D	I	F	F	P	V	V	H	G	N
Template Known Secondary structure										T	T	S	S										T	T	S													T	T												T	T			T	T		T	T					T	T	S	T	T				S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
				410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	S	S	Q	E	A	R	R	L	F	S	E	A	G	L	P	T	Y	R	T	P	E	G	T	I	T	A	F	M	H	M	V	E	Y	R	R	N	Q	K	Q	L	R	E	T	P	A	L	P	S	N	L	T	S	N	T	A	E	A	H	L	L	L	Q	Q	A	I	A	E	G	A	T	S	L	D	T	H	E	V	Q
Query Conservation		.	.
Alig confidence		.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	E	D	G	T	L	Q	G	L	F	K	L	L	D	K	P	Y	V	G	A	P	L	R	G	H	A	V	S	F	D	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	K
Template Known Secondary structure		T	T	S	S	S									T	T			B	S	S											S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.																																													.	.	540
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.					.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		P	I	L	Q	A	Y	G	M	N	T	L	P	T	W	I	A	S	D	S	T	.	.	.	.	E	A	V	H	I	A	E	Q	I	G	Y	P	V	A	L	K	L	R	S	P	D	I	P	H	K	S	E	V	Q	G	V	M	L	Y	L	R	T	A	N	E	V	Q	Q	A	A	N	A	I	F	D	R	V	K	M	A	W
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.																		.	.	.	.	.												.																					.	.
Template Conservation																																											.	.	.	.	.												.																					.	.
Template Sequence		E	L	L	T	V	N	G	I	R	N	T	K	Y	I	V	V	D	P	E	S	A	N	N	W	S	W	D	K	I	V	A	E	L	G	N	I	V	F	V	K	A	.	.	.	.	.	A	N	Q	G	S	S	V	G	I	S	R	.	V	T	N	A	E	E	Y	T	E	A	L	S	D	S	F	Q	Y	D	Y	K	.	.
Template Known Secondary structure							T	T											T	T	G	G	G	G										T		S							.	.	.	.	.	S	S			S	S	T	T				.			S												T	T	T		S		.	.
Template Predicted Secondary structure																																											.	.	.	.	.												.																					.	.
Template SS confidence
		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.						.	.	.	.	.	.	.	.	590	.	.		.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	R	V	H	G	L	L	V	Q	S	M	A	N	R	A	G	A	Q	E	L	R	V	V	V	E	H	D	P	V	F	G	P	L	I	M	L	G	E	G	G	V	E	W	R	P	E	D	Q	A	V	V	A	L	P	P	L	N	M	N	L	A	R	Y	L	V	I	Q	G	I	K	S	K	K	I	R	A	R	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.								.	.																																	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.								.	.																																	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	V	L	I	E	E	A	V	.	.	N	G	A	R	E	L	E	V	G	V	I	G	N	D	Q	P	L	V	S	E	I	G	A	H	T	V	H	F	Q	I	P	A	.	.	.	.	.	.	.	.	Q	L	S	P	E	V	T	K	E	V	K	Q	M	A	L	D	A	Y	K	V	L	N	L	R
Template Known Secondary structure		.	.	.	.	.	.	.								.	.													S	S	S															S	S		.	.	.	.	.	.	.	.																					T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.								.	.																																	.	.	.	.	.	.	.	.
Template SS confidence
									613	.	.	.	.	.	.			620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.									.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	R	P	L	D	V	A	G	L	S	Q	L	L	V	Q	V	S	N	L	I	V	D	C	P	E	I	Q	R	L	D	I	H	P
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	A	R	M	D	F	L	.	.	.	.	.	.	.	.	.	.	.	.	L	D	E	N	N	V	P	Y	L	G	E	P	N	T
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.			T	T										S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		698	.	700	.	.	.	.	.													.	.	.	.	710	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions