Job Description P51025 Confidence 99.62% Date Thu Jan 5 12:04:51 GMT 2012 Rank 124 Aligned Residues 217 % Identity 17% Template c2y6vB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:peroxisomal membrane protein lpx1; PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i) Resolution 2.83 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.								.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																.	.	.																																					.	.	.	.	.	.	.
Query SS confidence																.	.	.																																					.	.	.	.	.	.	.
Query Sequence		K	C	E	M	N	V	G	V	Y	L	P	P	K	A	.	.	.	A	N	E	K	L	P	V	L	Y	W	L	S	G	L	T	C	N	E	Q	N	F	I	T	K	S	G	M	Q	R	Y	A	A	E	H	N	I	.	.	.	.	.	.	.	I	V	V	A	P	D	T	S	P	R	G	S	H	V	A	D	A	D	R	Y
Query Conservation																.	.	.																																					.	.	.	.	.	.	.
Alig confidence																.	.	.																												.	.	.							.	.	.	.	.	.	.
Template Conservation																																														.	.	.
Template Sequence		R	L	E	L	T	Y	D	V	Y	T	S	A	E	R	R	R	S	R	T	A	T	R	L	N	L	V	F	L	H	G	S	G	M	S	K	V	V	W	E	Y	Y	L	P	R	.	.	.	L	V	A	A	D	A	E	G	N	Y	A	I	D	K	V	L	L	I	D	Q	V	N	H	G	D	S	A	V	R	N	R	G	R
Template Known Secondary structure													S						T	T												T	T			G	G	G	G	G	G	G	G	G	G	.	.	.	S					T	T	T													T	T	S							T	T	T	T
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		D	L	G	Q	G	A	G	F	Y	L	N	A	T	Q	A	P	W	N	E	H	Y	K	M	Y	D	Y	I	R	N	E	L	P	D	L	V	M	H	H	F	P	A	T	.	.	.	A	K	K	S	I	S	G	H	S	M	G	G	L	G	A	L	V	L	A	L	R	N	P	D	E	Y	V	S	V	S	A	F	S	P	I
Query Conservation																																												.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	N	W	I	D	G	A	R	D	V	L	K	I	A	T	E	L	G	S	I	D	S	H	P	A	L	N	V	V	I	G	H	S	M	G	G	F	Q	A	L	A	C	D	V	L	Q	P	N	L	F	H	L	L	I	L	I	E	P	V
Template Known Secondary structure		B		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				G	G	G		S									T														T	T	S		S						S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.																		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		172	.	.	.	.	.																																																																.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	P	S	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	W	G	Q	Q	A	F	A	A	Y	L
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	T	R	K	A	I	P	P	D	S	P	Q	I	P	E	N	L	Y	N	S	L	R	L	K	T	D	H	F	A	N	E	S	E	Y	V	K	Y	M	R	N	G	S	F	F	T	N	A	H	S	Q	I	L	Q	N	I	I	D	F	E	R	T	K	G	P	V	R	T	K	M	E	Q	A	Q	N	L	L	C	Y	M
Template Known Secondary structure			S							T	T															T					S	S											T	S	S		T	T	S																					S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	N	K	D	A	W	L	D	Y	D	P	V	S	L	I	S	Q	G	Q	R	V	A	E	I	M	V	D	Q	G	L	S	D	D	F	Y	A	E	Q	L	R	T	P	N	L	E	K	I	C	Q	E	M	N	I	K	T	L	I	R	Y	H	E	G	Y	D	H	S	Y	Y	F	V	S	S	F	I	G	E	H	I	A
Query Conservation
Alig confidence																		.	.	.	.	.																		.	.	.	.	.	.																							.	.
Template Conservation																		.	.	.	.	.																		.	.	.	.	.	.																							.	.
Template Sequence		N	M	Q	T	F	A	P	F	L	I	S	N	V	K	F	V	.	.	.	.	.	R	K	R	T	I	H	I	V	G	A	R	S	N	W	P	P	Q	.	.	.	.	.	.	N	Q	L	F	L	Q	K	T	L	Q	N	Y	H	L	D	V	I	P	G	G	S	H	.	.	L	V	N	V	E	A	P	D	L	V	I	E
Template Known Secondary structure			G	G	G	T						T	T	G	G	G		.	.	.	.	.		S								T	T							.	.	.	.	.	.										S	S							T	T			T	.	.	T					S
Template Predicted Secondary structure																		.	.	.	.	.																		.	.	.	.	.	.																							.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.						.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300							.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.
		269	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	A	N	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	N	H	H	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions