Job Description P51025 Confidence 100.00% Date Thu Jan 5 12:04:51 GMT 2012 Rank 26 Aligned Residues 236 % Identity 11% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																	.																			.	.
Query SS confidence																	.																			.	.
Query Sequence		K	C	E	M	N	V	G	V	Y	L	P	P	K	A	A	.	N	E	K	L	P	V	L	Y	W	L	S	G	L	T	C	N	E	Q	.	.	N	F	I	T	K	S	G	M	Q	R	Y	A	A	E	H	N	I	I	V	V	A	P	D	T	S	P	R	G	S	H	V	A	D	A	D	R	Y	D	L	G	Q	G	A	G
Query Conservation																	.																			.	.
Alig confidence																	.																			.	.																																										.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		D	Y	N	L	P	M	Q	I	L	K	P	A	T	F	T	D	T	T	H	Y	P	L	L	L	V	V	D	G	T	P	G	S	Q	S	V	A	E	K	F	E	V	S	W	E	T	V	M	V	S	S	H	G	A	V	V	V	K	C	D	G	R	G	S	G	F	Q	G	T	K	L	L	H	E	V	R	R	R	.	.	.
Template Known Secondary structure		T						B			B		S	S			S	S	S												T	T											S								T	T										T	T		S	S	S							T	T	T	T		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.
Query SS confidence																																																										.	.	.	.
Query Sequence		F	Y	L	N	A	T	Q	A	P	W	N	E	H	Y	K	M	Y	D	Y	I	R	N	E	L	P	D	L	V	M	H	H	F	P	A	T	A	K	K	S	I	S	G	H	S	M	G	G	L	G	A	L	V	L	A	L	R	.	.	.	.	N	P	D	E	Y	V	S	V	S	A	F	S	P	I	V	S	P	S	Q	V
Query Conservation																																																										.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	L	G	L	L	E	E	K	D	Q	M	E	A	V	R	T	M	L	K	E	Q	Y	I	D	R	T	R	V	A	V	F	G	K	D	Y	G	G	Y	L	S	T	Y	I	L	P	A	K	G	E	N	Q	G	Q	T	F	T	C	G	S	A	L	S	P	I	T	D	F	K	L	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	T	T															S	S	S	S												T													S	S	S	T	T					S						S					T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.
		178	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		P	W	.	G	Q	Q	A	F	A	A	Y	L	A	E	N	K	D	A	W	L	D	Y	D	P	V	S	L	I	S	Q	G	Q	R	V	A	E	I	M	V	D	Q	G	L	S	D	D	F	Y	A	E	Q	L	R	T	P	N	L	E	K	I	C	Q	E	M	N	I	K	T	L	I	R	Y	H	E	G	Y	D	H	S	Y
Query Conservation				.
Alig confidence				.																															.																		.
Template Conservation																																			.																		.
Template Sequence		A	S	A	F	S	E	R	Y	L	G	L	H	G	L	D	N	R	A	Y	E	M	T	K	V	A	H	R	V	S	A	L	E	E	.	Q	Q	F	L	I	I	H	P	T	A	D	E	K	I	H	F	Q	.	H	T	A	E	L	I	T	Q	L	I	R	G	K	A	N	Y	S	L	Q	I	Y	P	D	E	S	H	Y	F
Template Known Secondary structure		B												S	S			S	S	T	T	T	S		T					T	S			S	.									T	T		S	S	S				.												T	T									T	T			S	S
Template Predicted Secondary structure																																			.																		.
Template SS confidence
		749	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.		.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.		.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.
					257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	Y	F	V	S	S	F	I	G	E	H	I	A	Y	H	A	N	K	L	N	M
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		T	S	S	S	L	K	Q	H	L	Y	R	S	I	I	N	F	F	V	E	C	F	R	I
Template Known Secondary structure																			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		827	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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