Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	T	R	W	Q	Q	A	G	Q	K	V	K	P	G	F	K	L	A	G	K	L	V	L	L	T	A	L	R	Y	G	P	A	G	V	A	G	W	A	I	K	S	V	A	R	R	P	L	K	M	L	L	A	V	A	L	E	P	L	L
Secondary structure
SS confidence
Disorder		?	?	?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.
Sequence		S	R	A	A	N	K	L	A	Q	R	Y	K	R
Secondary structure
SS confidence
Disorder												?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2b6c chain A domain 1 Region: 35 - 73 Aligned: 39 Modelled: 39 Confidence: 27.6% Identity: 18% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: BC3264-like Phyre2 PDB 2zsh chain B Region: 7 - 39 Aligned: 33 Modelled: 33 Confidence: 15.0% Identity: 18% PDB header:hormone receptor Chain: B: PDB Molecule:della protein gai; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor Phyre2 PDB 2ket chain A Region: 4 - 20 Aligned: 17 Modelled: 17 Confidence: 10.9% Identity: 29% PDB header:antibiotic Chain: A: PDB Molecule:cathelicidin-6; PDBTitle: solution structure of bmap-27 Phyre2 PDB 3bvs chain A Region: 35 - 72 Aligned: 38 Modelled: 38 Confidence: 10.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:alkylpurine dna glycosylase alkd; PDBTitle: crystal structure of bacillus cereus alkylpurine dna glycosylase alkd Phyre2 PDB 2ekg chain B Region: 42 - 72 Aligned: 31 Modelled: 31 Confidence: 8.1% Identity: 29% PDB header:oxidoreductase Chain: B: PDB Molecule:proline dehydrogenase/delta-1-pyrroline-5-carboxylate PDBTitle: structure of thermus thermophilus proline dehydrogenase inactivated by2 n-propargylglycine Phyre2 PDB 1rty chain B Region: 30 - 69 Aligned: 40 Modelled: 40 Confidence: 7.5% Identity: 15% Fold: Ferritin-like Superfamily: Cobalamin adenosyltransferase-like Family: Cobalamin adenosyltransferase Phyre2 1 d2b6ca1 2 c2zshB_ 3 c2ketA_ 4 c3bvsA_ 5 c2ekgB_ 6 d1rtyb_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2b6ca1 27.6 18 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:BC3264-like 2 c2zshB_ 15.0 18 PDB header:hormone receptor Chain: B: PDB Molecule:della protein gai; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor 3 c2ketA_ 10.9 29 PDB header:antibiotic Chain: A: PDB Molecule:cathelicidin-6; PDBTitle: solution structure of bmap-27 4 c3bvsA_ 10.0 13 PDB header:hydrolase Chain: A: PDB Molecule:alkylpurine dna glycosylase alkd; PDBTitle: crystal structure of bacillus cereus alkylpurine dna glycosylase alkd 5 c2ekgB_ 8.1 29 PDB header:oxidoreductase Chain: B: PDB Molecule:proline dehydrogenase/delta-1-pyrroline-5-carboxylate PDBTitle: structure of thermus thermophilus proline dehydrogenase inactivated by2 n-propargylglycine 6 d1rtyb_ 7.5 15 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Cobalamin adenosyltransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0