Job Description Q2A0L1 Confidence 98.28% Date Thu Jan 5 12:33:39 GMT 2012 Rank 42 Aligned Residues 137 % Identity 17% Template c4ktqA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna Resolution 2.50 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	T	F	G	T	H	P	A	L	D	R	P	A	Q	F	A	A	I	R	T	D	S	E	F	N	V	I	G	E	P	E	V	F	Y	C	K	P	A	D	D	Y	L	P	Q	P	G	A	V	L	I	T	G	I	T	P	Q	E	A	R	A	K	G	E	N	E	A	A	F	A	A	R	I	H	S	L	F	T	V	P
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	E	A	P	W	P	P	P	E	G	A	F	V	G	F	V	L	S	R	K	E	P	M	W	A	D	L	L	A	L	A	A	A	R	G	G	R	V	H	R	A	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	K	A	L	R
Template Known Secondary structure							S				S	S								S	S	S		T	T	T											T	T						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																															.	.	340	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	W	S	W	Q	H	D	N	S	R	W	D	L	L	D	V	M	R	A	C	Y	A	L	R	P	E	G	I	N	W	P	E	N	D	D	G	L	P	S	F	R	L	E	H	L	T	K	A	N	G	I
Query Conservation
Alig confidence											.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	K	E	A	R	G	L	L	.	A	K	D	L	S	V	L	A	L	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	G	L	P	P	G	D	D	P	M	L	L	A	Y	L	L	D	P	S	N	.	.	.	.	.	.	.	.	.	.	.	.	T	T	P	E	G	V	A	R	R	Y	G	G
Template Known Secondary structure		S		S	S	B		S	T	T	.											T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					B													T	T		.	.	.	.	.	.	.	.	.	.	.	.											S
Template Predicted Secondary structure											.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.															.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.													.	.	.	.	.	390	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		E	H	S	N	A	H	D	A	M	A	D	V	Y	A	T	I	A	M	A	K	L	V	K	T	R	.	.	.	Q	P	R	L	F	D	Y	L	F	T	H
Query Conservation																											.	.	.
Alig confidence				.	.																						.	.	.
Template Conservation				.	.
Template Sequence		E	W	.	.	T	E	E	A	G	E	R	A	A	L	S	E	R	L	F	A	N	L	W	G	R	L	E	G	E	E	R	L	L	W	L	Y	R	E	V
Template Known Secondary structure				.	.		S		T	T	T	T															T	T	T											T
Template Predicted Secondary structure				.	.
Template SS confidence
		397	.			.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions