Job Description Q2A0L1 Confidence 93.93% Date Thu Jan 5 12:33:39 GMT 2012 Rank 54 Aligned Residues 88 % Identity 24% Template c3ikmD_ PDB info PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme Resolution 3.24 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.												.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	W	S	W	Q	H	D	N	S	R	W	D	L	L	D	V	M	R	A	C	.	.	.	.	.	.	.	.	.	.	.	Y	A	L	R	P	E	G	I	N	W	P	E	N	D	D	G	L	P	S	F
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation										.																	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Sequence		E	Q	L	V	V	G	H	N	.	V	S	F	D	R	A	H	I	R	E	Q	Y	L	I	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	S	R	M	R	F	L	D	T	M	S	M	H	M	A	I	S	G	L	S	S	F	Q	R	S	L	W	I	A	A	K	Q	G	W	D	W	L	D	I	S	S	V	N	.
Template Known Secondary structure		S								.	S	T	T	S								T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.																															T										S	T	.
Template Predicted Secondary structure										.																	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template SS confidence
		263	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.													.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.																						.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	E	H	L	T	K	A	N	.	.	G	I	E	H	S	N	A	H	D	A	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	Y	A	T	I	A	M	A	K	L	V
Query Conservation											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	A	E	V	H	R	L	Y	V	G	G	P	P	L	E	K	E	P	R	E	L	F	V	K	G	T	M	K	D	I	R	E	N	F	Q	D	L	M	Q	Y	C	A	Q	D	V	W	A	T	H	E	V	F	Q	Q	Q
Template Known Secondary structure		T	T	S						T		S	S	T	T	T	S	S	S	S	S	S	G	G	G	S	S		S								T	T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions