Job Description Q2A0L1 Confidence 98.65% Date Thu Jan 5 12:33:39 GMT 2012 Rank 36 Aligned Residues 180 % Identity 17% Template c2vwkA_ PDB info PDB header:dna replication Chain: A: PDB Molecule:dna polymerase; PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant Resolution 2.6 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		Q	S	T	F	L	F	H	D	Y	E	T	F	.	.	.	G	T	H	P	A	L	D	R	P	A	Q	F	A	A	I	R	T	D	S	E	F	N	V	I	G	E	P	E	V	F	Y	C	K	P	A	D	D	Y	L	P	Q	P	G	A	V	L	I	T	G	I	T	P	Q	E	A	R	A	K	G	E	N	E	A	A	F
Query Conservation														.	.	.
Alig confidence														.	.	.																.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	K	M	L	A	F	D	I	E	T	L	Y	H	E	G	E	K	F	A	E	G	P	I	L	M	I	S	Y	A	.	.	.	.	.	.	.	D	E	E	G	A	R	V	I	T	W	R	N	I	D	L	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	V	V	S	T	E	K	E	M
Template Known Secondary structure																T	T	S		T	T		S									.	.	.	.	.	.	.		S	S							S	S					T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S
Template Predicted Secondary structure																																.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.								.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180																	.	.	.	.	.	.	.	.	.	190
		85	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.									.	.	.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure												.																													.	.	.	.	.	.	.	.															.	.	.	.	.
Query SS confidence												.																													.	.	.	.	.	.	.	.															.	.	.	.	.
Query Sequence		A	A	R	I	H	S	L	F	T	V	.	P	K	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	.	.	.	.	.	.	.	.	P	Y	A	W	S	W	Q	H	D	N	S	R	W	D	.	.	.	.	.	L	L	D	V	M	R	A	C	Y	A	L	R	P	E
Query Conservation												.																													.	.	.	.	.	.	.	.															.	.	.	.	.
Alig confidence												.																													.	.	.	.	.	.	.	.															.	.	.	.	.														.
Template Conservation																																																																																	.
Template Sequence		I	K	R	F	L	K	V	V	K	E	K	D	P	D	V	L	I	T	Y	N	G	D	N	F	A	F	A	Y	L	K	K	R	S	E	K	L	G	V	K	F	I	L	G	R	E	G	S	E	P	K	I	Q	R	M	G	D	R	F	A	V	E	V	K	G	R	I	H	F	D	L	Y	P	V	I	R	R	T	I	N	.
Template Known Secondary structure															S					S	S	T	T	T	T													T						S	T	T	S									T	T							T	T	S													S		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		G	I	N	W	P	E	N	D	D	G	L	P	S	F	R	L	E	H	L	T	K	A	N	G	I	E	H	S	N	A	H	D	A	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	Y	A	T	I	A	M	A	K	L	V	K	T	R	Q	P	R	L	.	.	.	.	.	.
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	L	P	T	Y	T	L	E	A	V	Y	E	A	I	F	G	Q	P	K	E	K	V	Y	A	E	E	I	A	Q	A	W	E	T	G	E	G	L	E	R	V	A	R	Y	S	M	E	D	A	K	V	T	Y	E	L	G	K	E	F	F	P	M	E	A	Q	L	S	R	L	V	G	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		S	S										T	T		S																T		T	T																																		T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
			205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	F	D	Y	L	F	T	H	R	N	K	H	K	L	M	A	L	I
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		S	L	W	D	V	S	R	S	S	T	G	N	L	V	E	W	F	L
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions