Job Description Q2A0L1 Confidence 99.04% Date Thu Jan 5 12:33:39 GMT 2012 Rank 27 Aligned Residues 178 % Identity 15% Template c2gv9B_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase Resolution 2.68 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.				.	20	.						.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.				.	.	.	.	.					.	.
Query SS confidence													.	.	.				.	.	.	.	.					.	.
Query Sequence		Q	S	T	F	L	F	H	D	Y	E	T	.	.	.	F	G	T	.	.	.	.	.	H	P	A	L	.	.	D	R	P	A	Q	F	A	A	I	R	T	D	S	E	F	N	V	I	G	E	P	E	V	F	Y	C	K	P	A	D	D	Y	L	P	Q	P	G	A	V	L	I	T	G	I	T	P	Q	E	A	R	A	K
Query Conservation													.	.	.				.	.	.	.	.					.	.
Alig confidence													.	.	.				.	.	.	.	.					.	.
Template Conservation
Template Sequence		A	Y	K	L	M	C	F	D	I	E	C	K	A	G	G	E	D	E	L	A	F	P	V	A	G	H	P	E	D	L	V	I	Q	I	S	C	L	L	Y	D	L	S	T	T	A	L	E	H	V	L	L	F	S	L	G	S	C	D	L	P	E	S	H	L	N	E	L	A	A	R	G	L	P	T	P	V	V	L	E	F
Template Known Secondary structure																S	S		T	T	S				T	T	S	T	T	S												T	T	T												S															T	T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																			.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	N	E	A	A	F	A	A	R	I	H	S	L	F	T	V	.	P	K	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	W	S	W	Q	H	D	N	S	R	W	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		D	.	S	E	F	E	M	L	L	A	F	M	T	L	V	K	Q	Y	G	P	E	F	V	T	G	Y	N	I	I	N	F	D	W	P	F	L	L	A	K	L	T	D	I	Y	K	V	P	L	D	G	Y	G	R	M	N	G	R	G	V	F	R	V	W	D	I	G	Q	S	H	F	Q	K	R	S	K	I	K	V	N	G
Template Known Secondary structure		S	.	S																		S					S	S	T	T	T	T											T	T	T					T	T	S	S	S	B	S	S	S								S	S			T	T	S							B	T	T
Template Predicted Secondary structure			.
Template SS confidence
		441		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
				137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.																					.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure		.	.																																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	L	L	D	V	M	R	A	C	Y	A	L	R	P	E	G	I	N	W	P	E	N	D	D	G	L	P	S	F	R	L	E	H	L	T	K	A	N	.	G	I	E	H	S	N	A	H	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	A	D	V	Y	A	T	I	A	M
Query Conservation		.	.																																						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.													.	.	.	.	.	.	.	.	.	.	.															.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	V	N	I	D	M	Y	G	I	I	T	D	K	I	.	.	.	.	.	.	.	.	.	.	.	K	L	S	S	Y	K	L	N	A	V	A	E	A	V	L	K	D	K	K	K	D	L	S	Y	R	D	I	P	A	Y	Y	A	T	G	P	A	Q	R	G	V	I	G	E	Y	C	I	Q	D	S	L	L	V	G	Q	L
Template Known Secondary structure		B											T	T		.	.	.	.	.	.	.	.	.	.	.			S			S																		T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		520	.	.	.	.	.	.	.	.	.	530	.	.	.												.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
		194	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	F	K	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		589	590	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions