Job Description Q2A0L1 Confidence 97.99% Date Thu Jan 5 12:33:39 GMT 2012 Rank 46 Aligned Residues 133 % Identity 18% Template c1yt3A_ PDB info PDB header:hydrolase,translation Chain: A: PDB Molecule:ribonuclease d; PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing Resolution 1.60 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	S	T	F	L	F	H	D	Y	E	T	F	G	T	H	P	A	L	D	R	P	A	Q	F	A	A	I	R	T	D	S	E	F	N	V	I	G	E	P	E	V	F	Y	C	K	P	A	D	D	Y	L	P	Q	P	G	A	V	L	I	T	G	I	T	P	Q	E	A	R	A	K	G	E	N	E	A	A	F	A	A
Query Conservation
Alig confidence																												.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	F	P	A	I	A	L	D	T	E	F	V	R	T	R	T	Y	Y	P	Q	L	G	L	I	Q	.	.	L	F	D	G	E	H	L	A	L	I	D	P	L	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	W	S
Template Known Secondary structure		T	T	S	S												S		S	S								.	.				S	S							G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																												.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60																																		.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	H	S	L	F	T	V	P	K	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	W	S	W	Q	H	D	N	S	R	W	D	L	L	D	V	M	R	A	C	Y	A	L	R	P	E	G	I	N	W	P	E	N	D	D	G	L	P	S	F	R	L
Query Conservation
Alig confidence																				.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	K	A	I	L	R	D	P	S	I	T	K	F	L	H	A	G	.	S	E	D	L	E	V	F	L	N	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	L	P	Q	P	L	I	D	T	Q	I	L	A	A	F	C	G	R	.	.	.	.	.	.	.	.	.	.	.	P	M	S	W	G	F
Template Known Secondary structure										T	T	S					S	S		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			S	S											T	T		.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																				.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.															.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.												.	.	.	.	.	.
		167	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.																	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	H	L	T	K	A	N	.	G	I	E	H	S	N	A	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	A	D	V	Y	A	T	I	A	M	A	K	L	V	K	T	R
Query Conservation									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	M	V	E	E	Y	S	G	V	T	L	D	K	S	E	S	R	T	D	W	L	A	R	P	L	T	E	R	Q	C	E	Y	A	A	A	D	V	W	Y	L	L	P	I	T	A	K	L	M	V	E
Template Known Secondary structure																T	T	T	T	S		T	T	S	S	S															T
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions