Job Description Q2A0L1 Confidence 98.34% Date Thu Jan 5 12:33:39 GMT 2012 Rank 41 Aligned Residues 191 % Identity 12% Template c1s5jA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna polymerase i; PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus Resolution 2.40 Å

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		8	.	10	.	.	.	.	.	.	.	.					.	20	.			.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.				.	.						.	.
Query SS confidence													.	.	.	.				.	.						.	.
Query Sequence		Q	S	T	F	L	F	H	D	Y	E	T	.	.	.	.	F	G	T	.	.	H	P	A	L	D	.	.	R	P	A	Q	F	A	A	I	R	T	D	S	E	F	N	V	I	G	E	P	E	V	F	Y	C	K	P	A	D	D	Y	L	P	Q	P	G	A	V	L	I	T	G	I	T	P	Q	E	A	R	A	K	G	E
Query Conservation													.	.	.	.				.	.						.	.
Alig confidence													.	.	.	.				.	.						.	.									.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	K	R	V	A	I	D	I	E	V	Y	T	P	V	K	G	R	I	P	D	S	Q	K	A	E	F	P	I	I	S	I	A	L	A	.	.	G	S	D	G	L	K	K	V	L	V	L	N	R	N	D	V	N	E	G	S	V	K	L	D	G	I	S	V	E	R	F	N	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															S	S	S	S					T	T	T			S									.	.		T	T	S									S	S										T	T							S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		N	E	A	A	F	A	A	R	I	H	S	L	F	T	V	P	K	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	.	.	.	W	S	W	Q	H	D	N	S	R	W	D	L	L	D	V	M	R	A	C	Y	A	L	R	P	E	G	I	N	W	P	E
Query Conservation																																																.	.	.
Alig confidence																			.																													.	.	.
Template Conservation																			.
Template Sequence		T	E	Y	E	L	L	G	R	F	F	D	I	L	L	E	Y	P	.	I	V	L	T	F	N	G	D	D	F	D	L	P	Y	I	Y	F	R	A	L	K	L	G	Y	F	P	E	E	I	P	I	D	V	A	G	K	D	E	A	K	Y	L	A	G	L	H	I	D	L	Y	K	F	F	F	N	K	A	V	R	N	Y	A
Template Known Secondary structure		S													T	T		S	.					S	S	T	T	T	T											T	T	T			G	G	G		S					S	T	T					T	T	S										T	S							T
Template Predicted Secondary structure																			.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.												.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																			.												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	D	G	L	P	S	F	R	L	E	H	L	T	K	A	N	.	G	I	E	H	S	N	A	H	D	A	M	.	.	.	.	.	.	.	.	.	.	.	A	D	V	Y	A	T	I	A	M	A	K	L	V	K	T	R	Q	P	R	L	F	D	Y	L	F	T	H	R
Query Conservation																			.												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	G	K	Y	N	E	Y	N	L	D	A	V	A	K	A	L	L	G	T	S	K	V	D	T	L	I	S	F	L	D	V	E	K	L	I	E	Y	N	F	R	D	A	E	I	T	L	Q	L	T	T	F	N	N	D	L	T	M	K	L	I	V	L	F	S	R	I	S
Template Known Secondary structure		S	T	T			S	S		S															S	S		T	T	T																				T	T	T
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions