Job Description Q2A0L1 Confidence 83.50% Date Thu Jan 5 12:33:39 GMT 2012 Rank 56 Aligned Residues 83 % Identity 19% Template c1cmwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: crystal structure of taq dna-polymerase shows a new2 orientation for the structure-specific nuclease domain Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	W	S	W	Q	H	D	N	S	R	W	D	L	L	D	V	M	R	A	C	Y	A	L	R	P	E	G	I	N	W	P	E	N	D	D	G	L	P	S	F	R	L	E	H	L	T	K	A	N	G	I	E	H	S	N
Query Conservation
Alig confidence						.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation						.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Sequence		A	R	G	L	.	L	A	K	D	L	S	V	L	A	L	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	G	L	P	P	G	D	D	P	M	L	L	A	Y	L	L	D	P	S	N	.	.	.	.	.	.	.	.	.	.	.	.	T	T	P	E	G	V	A	R	R	Y	G	G	E	W	.	.
Template Known Secondary structure		B		S	T	.	T											T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					B													T	T		.	.	.	.	.	.	.	.	.	.	.	.		S								T	S				.	.
Template Predicted Secondary structure						.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		348	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.															.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.													.	.	.	.	.	390	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		A	H	D	A	M	A	D	V	Y	A	T	I	A	M	A	K	L	V	K	T	R	Q	.	.	.	P	R	L	F	D	Y	L	F	T	H
Query Conservation																								.	.	.
Alig confidence																								.	.	.
Template Conservation
Template Sequence		T	E	E	A	G	E	R	A	A	L	S	E	R	L	F	A	N	L	W	G	R	L	E	G	E	E	R	L	L	W	L	Y	R	E	V
Template Known Secondary structure			S																					T	T											T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions