Job Description P38135 Confidence 100.00% Date Thu Jan 5 11:58:04 GMT 2012 Rank 15 Aligned Residues 505 % Identity 19% Template c3kxwA_ PDB info PDB header:ligase Chain: A: PDB Molecule:saframycin mx1 synthetase b; PDBTitle: the crystal structure of fatty acid amp ligase from legionella2 pneumophila Resolution 1.85 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		G	D	A	S	L	A	D	Y	W	Q	Q	T	A	R	A	M	P	D	K	I	A	V	V	D	N	H	G	.	.	.	A	S	Y	T	Y	S	A	L	D	H	A	A	S	C	L	A	N	W	M	L	A	K	G	I	E	S	G	D	R	I	A	F	Q	L	P	G	W	C	E	F	T	V	I	Y	L	A	C	L	K	I
Query Conservation																													.	.	.
Alig confidence																													.	.	.
Template Conservation
Template Sequence		Q	C	Q	S	L	V	D	V	V	R	L	R	A	L	H	S	P	N	K	K	S	C	T	F	L	N	K	E	L	E	E	T	X	T	Y	E	Q	L	D	Q	H	A	K	A	I	A	A	T	L	Q	A	E	G	A	K	P	G	D	R	V	L	L	L	F	A	P	G	L	P	L	I	Q	A	F	L	G	C	L	Y	A
Template Known Secondary structure		T		S	S													T	T	S								T	T																								T	T			T	T									S	S													T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		G	A	V	S	V	P	L	L	P	S	W	R	E	.	.	.	A	E	L	V	W	V	L	N	K	C	Q	A	K	M	F	F	A	P	T	L	F	K	Q	T	R	P	V	D	L	I	L	P	L	Q	N	Q	L	P	Q	L	Q	Q	I	V	G	V	D	K	L	A	P	A	T	S	S	L	S	L	S	Q	I	I	A	D
Query Conservation															.	.	.
Alig confidence															.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	C	I	A	V	P	I	Y	P	P	A	Q	E	K	L	L	D	K	A	Q	R	I	V	T	N	S	K	P	V	I	V	L	X	I	A	D	H	I	K	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	N	P	K	F	L	K	I	P	A	I	A	L	E	S	I	E	L	N
Template Known Secondary structure		T											S																	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T						G	G	G			G	G
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	S	L	T	T	A	I	T	T	H	G	D	E	L	A	A	V	L	F	T	S	G	T	E	G	L	P	K	G	V	M	L	T	H	N	N	I	L	A	S	E	R	A	Y	C	A	R	L	N	L	T	W	Q	D	V	F	M	M	P	A	P	L	G	H	A	T	G	F	L	H	G	V	T	A	P	F	L	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	S	S	W	Q	P	T	S	I	K	S	N	D	I	A	F	L	Q	Y	T	S	G	S	T	X	H	P	K	G	V	X	V	S	H	H	N	L	L	D	N	L	N	K	I	F	T	S	F	H	X	N	D	E	T	I	I	F	S	W	L	P	P	H	H	D	X	G	L	I	G	C	I	L	T	P	I	Y	G	G
Template Known Secondary structure		G	G	G	G								T	T	S								S	S		S	S	S																						T	T			T	T							S		T	T	S						T	T	T							T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		256	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.				.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																														.	.	.																																		.	.
Query SS confidence											.	.	.	.																														.	.	.																																		.	.
Query Sequence		A	R	S	V	L	L	D	I	F	.	.	.	.	T	P	D	A	C	L	A	L	L	E	Q	Q	R	C	T	C	M	L	G	A	T	P	F	V	Y	D	L	L	N	.	.	.	V	L	E	K	Q	P	A	D	L	S	A	L	R	F	F	L	C	G	G	T	T	I	P	K	K	V	A	R	E	C	Q	Q	R	.	.
Query Conservation											.	.	.	.																														.	.	.																																		.	.
Alig confidence											.	.	.	.																														.	.	.																																		.	.
Template Conservation
Template Sequence		I	Q	A	I	X	X	S	P	F	S	F	L	Q	N	P	L	S	W	L	K	H	I	T	K	Y	K	A	T	I	S	G	S	P	N	F	A	Y	D	Y	C	V	K	R	I	R	E	E	K	K	E	G	L	D	L	S	S	W	V	T	A	F	N	G	A	E	P	V	R	E	E	T	X	E	H	F	Y	Q	A	F	K
Template Known Secondary structure																T											T		S						T												G	G	G	G	T	T				T	T								S	S															G
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
							327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.																								.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.
Predicted Secondary structure		.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence		.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		.	.	.	.	.	G	I	K	L	L	S	V	Y	G	S	T	E	S	S	P	H	A	V	V	N	L	D	D	P	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	M	H	T	D	G	Y	A	A	A	G	V	E	I	K	V	V	D	D	A	.	R	K	T	L
Query Conservation		.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence		.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		E	F	G	F	R	K	E	A	F	Y	P	C	Y	G	L	A	E	A	T	L	L	V	T	G	G	T	P	G	S	S	Y	K	T	L	T	L	A	K	E	Q	F	Q	D	H	R	V	H	F	A	D	D	N	S	P	G	S	Y	K	L	V	S	S	G	N	P	I	Q	E	V	K	I	I	D	P	D	T	L	I	P	C
Template Known Secondary structure		G	G	T			G	G	G								G	G	G	S	S							T	T	S									S				S	S	S	B			B			T	T		T	T											S	S							T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.					.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		P	P	G	C	E	G	E	E	A	S	R	G	P	N	V	F	M	G	Y	F	D	E	P	E	L	T	A	R	A	L	.	.	.	.	D	E	E	G	W	Y	Y	S	G	D	L	C	R	M	D	E	A	G	Y	I	K	I	T	G	R	K	K	D	I	I	V	R	G	G	E	N	I	S	S	R	E	V	E	D	I	L
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.
Template Conservation
Template Sequence		D	F	D	Q	V	G	E	I	W	V	Q	S	N	S	V	A	K	G	Y	W	N	Q	P	E	E	T	R	H	A	F	A	G	K	I	K	D	D	A	I	Y	L	R	T	G	D	L	G	F	L	H	E	N	E	L	Y	V	T	G	R	I	K	D	L	I	I	I	Y	G	K	N	H	Y	P	Q	D	I	E	F	S	L
Template Known Secondary structure			T	T	B								S	T	T	S				B	T	T											B			T	T				B											T	T								S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		454	.	.	.	.				.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.				.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																																					.	.	.
Query SS confidence							.	.	.																																					.	.	.
Query Sequence		L	Q	H	P	K	.	.	.	I	H	D	A	C	V	V	A	M	S	D	E	R	L	G	E	R	S	C	A	Y	V	V	L	K	A	P	H	H	S	L	S	L	E	E	V	.	.	.	V	A	F	F	S	R	K	R	V	A	K	Y	K	Y	P	E	H	I	V	V	I	E	K	L	P	R	T	T	S	G	K	I	Q
Query Conservation							.	.	.																																					.	.	.
Alig confidence							.	.	.																																					.	.	.
Template Conservation
Template Sequence		X	H	S	P	L	H	H	V	L	G	K	C	A	A	F	V	I	Q	E	E	H	E	Y	K	L	T	V	X	C	E	V	K	N	R	F	X	D	D	V	A	Q	D	N	L	F	N	E	I	F	E	L	V	Y	E	N	H	Q	L	E	V	H	T	I	V	L	I	P	L	K	A	X	P	H	T	T	S	G	K	I	R
Template Known Secondary structure				S	G	G	G	G	G												T	T											S		T	T																						S											T	T		S				S
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	L	L	R	K	D	I	M	R	R	L	T	Q	D	V	C	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	N	F	C	R	K	H	L	L	D	K	T	L	P	I	V	A	T
Template Known Secondary structure												T		S			S
Template Predicted Secondary structure
Template SS confidence
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.