Job Description P38135 Confidence 100.00% Date Thu Jan 5 11:58:04 GMT 2012 Rank 4 Aligned Residues 493 % Identity 19% Template c3e7wA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains Resolution 2.28 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		A	S	L	A	D	Y	W	Q	Q	T	A	R	A	M	P	D	K	I	A	V	V	D	N	H	G	A	S	Y	T	Y	S	A	L	D	H	A	A	S	C	L	A	N	W	M	L	A	.	K	G	I	E	S	G	D	R	I	A	F	Q	L	P	G	W	C	E	F	T	V	I	Y	L	A	C	L	K	I	G	A	V	S
Query Conservation																																																.
Alig confidence																										.																						.
Template Conservation																										.
Template Sequence		M	K	L	L	H	A	I	Q	T	H	A	E	T	Y	P	Q	T	D	A	F	R	S	Q	G	.	Q	S	L	T	Y	Q	E	L	W	E	Q	S	D	R	A	A	A	A	I	Q	K	R	I	S	G	E	K	K	S	P	I	L	V	Y	G	H	M	E	P	H	M	I	V	S	F	L	G	S	V	K	A	G	H	P	Y
Template Known Secondary structure															S	T	T	S						T	T	.																				T	T	T	S		S	S	S									S	S															T
Template Predicted Secondary structure																										.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	L	L	P	S	W	R	E	A	E	L	V	W	V	L	N	K	C	Q	A	K	M	F	F	A	P	T	L	F	K	Q	T	R	P	V	D	L	I	L	P	L	Q	N	Q	L	P	Q	L	Q	Q	I	V	G	V	D	K	L	A	P	A	T	S	S	L	S	L	S	Q	I	I	A	D	N	T	S	L	T	T	A
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	V	D	L	S	I	P	S	E	R	I	A	K	I	I	E	S	S	G	A	E	L	L	I	H	A	A	G	L	S	I	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	Q	Q	I	Q	T	V	S	A	E	E	L	L	E	N	E	G	G	S	V	S	Q	D
Template Known Secondary structure						T	T	S													T							S	S	S			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S										T	S		S					G	G
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		I	T	T	H	G	D	E	L	A	A	V	L	F	T	S	G	T	E	G	L	P	K	G	V	M	L	T	H	N	N	I	L	A	S	E	R	A	Y	C	A	R	L	N	L	T	W	Q	D	V	F	M	M	P	A	P	L	G	H	A	T	G	F	L	H	G	V	T	A	P	F	L	I	G	A	R	S	V	L	L	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		Q	W	V	K	E	H	E	T	F	Y	I	I	Y	T	S	G	S	T	G	N	P	K	G	V	Q	I	S	A	A	N	L	Q	S	F	T	D	W	I	C	A	D	F	P	V	S	G	G	K	I	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	L	Y	P	C	L	Q	S	G	G	T	L	H	C	V	T	K
Template Known Secondary structure		G	S			T	T	S										T	T	S	S																						S	T	T	T	T	T							S		T	T	S	T												T	T
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
			262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																																	.	.
Query SS confidence		.																																																																	.	.
Query Sequence		.	D	I	F	T	P	D	A	C	L	A	L	L	E	Q	Q	R	C	T	C	M	L	G	A	T	P	F	V	Y	D	L	L	N	V	L	E	K	Q	P	A	D	L	S	A	L	R	F	F	L	C	G	G	T	T	I	P	K	K	V	A	R	E	C	Q	Q	.	.	R	G	I	K	L	L	S	V	Y	G	S	T	E
Query Conservation		.																																																																	.	.
Alig confidence		.																																																																	.	.
Template Conservation
Template Sequence		D	A	V	N	K	P	K	V	L	F	E	E	L	K	K	S	G	L	N	V	W	T	S	T	P	S	F	V	Q	M	C	L	M	D	P	G	F	S	Q	D	L	L	P	H	A	D	T	F	M	F	C	G	E	V	L	P	V	S	V	A	K	A	L	L	E	R	F	P	K	A	K	I	F	N	T	Y	G	P	T	E
Template Known Secondary structure						S														S														T	S	T	T		S	T	T	T		T	T								S	S															T	T										G	G
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.			.	.	.	.	410	.	.	.
Predicted Secondary structure															.	.	.																																																							.	.
Query SS confidence															.	.	.																																																							.	.
Query Sequence		S	S	P	H	A	V	V	N	L	D	D	P	L	.	.	.	S	R	F	M	H	T	D	G	Y	A	A	A	G	V	E	I	K	V	V	D	D	A	R	K	T	L	P	P	G	C	E	G	E	E	A	S	R	G	P	N	V	F	M	G	Y	F	D	E	P	E	L	T	A	R	.	.	A	L	D	E	E	G	W	Y
Query Conservation															.	.	.																																																							.	.
Alig confidence															.	.	.																																																							.	.
Template Conservation
Template Sequence		A	T	V	A	V	T	S	V	E	I	T	N	D	V	I	S	R	S	E	S	L	P	V	G	F	A	K	P	D	M	N	I	F	I	M	D	E	E	G	Q	P	L	P	E	G	E	K	G	E	I	V	I	A	G	P	S	V	S	R	G	Y	L	G	E	P	E	L	T	E	K	A	F	F	S	H	E	G	Q	W	A
Template Known Secondary structure		G	S	S		S											T	T		S	S				B				T	T								T	T	S		B			T	T									S	T	T	S				B	T	T												S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Y	S	G	D	L	C	R	M	D	E	A	G	Y	I	K	I	T	G	R	K	K	D	I	I	V	R	G	G	E	N	I	S	S	R	E	V	E	D	I	L	L	Q	H	P	K	I	H	D	A	C	V	V	A	M	S	D	E	R	L	G	E	R	S	C	A	Y	V	V	L	K	A	P	H	H	S	L	S	L	E	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		Y	R	T	G	D	A	G	F	I	Q	D	G	Q	I	F	C	Q	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	F	H	V	R	Q	S	Q	Y	V	R	S	A	V	V	I	P	Y	Q	P	N	G	T	V	E	Y	L	I	A	A	I	V	P	E	E	H	E	F	E	K	E	F	Q	L
Template Known Secondary structure												T	T								S	S	S					T	T															S	T	T											S	S	S	S																S	S
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
			493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	V	V	A	F	F	S	R	K	R	V	A	K	Y	K	Y	P	E	H	I	V	V	I	E	K	L	P	R	T	T	S	G	K	I	Q	K	F	L	L	R	K	D	I	M	R	R	L
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		T	S	A	I	K	K	E	L	A	A	S	L	P	A	Y	M	I	P	R	K	F	I	Y	Q	D	H	I	Q	M	T	A	N	G	K	I	D	R	K	R	I	G	E	E	V	L	V	R	S
Template Known Secondary structure													S		G	G	G	S		S						S				B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.