Job Description P38135 Confidence 100.00% Date Thu Jan 5 11:58:04 GMT 2012 Rank 14 Aligned Residues 486 % Identity 22% Template c3dhvA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase; PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate Resolution 2.00 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	D	Y	W	Q	Q	T	A	R	A	M	P	D	K	I	A	V	V	D	N	H	G	A	S	Y	T	Y	S	A	L	D	H	A	A	S	C	L	A	N	W	M	L	A	K	G	I	E	S	G	D	R	I	A	F	Q	L	P	G	W	C	E	F	T	V	I	Y	L	A	C	L	K	I	G	A	V	S	V	P	L
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		L	L	E	Q	I	E	K	W	A	A	E	T	P	D	Q	T	A	F	V	W	R	D	.	A	K	I	T	Y	K	Q	L	K	E	D	S	D	A	L	A	H	W	I	S	S	E	Y	P	D	D	R	S	P	I	M	V	Y	G	H	M	Q	P	E	M	I	I	N	F	L	G	C	V	K	A	G	H	A	Y	I	P	V
Template Known Secondary structure													S	T	T	S						T	T	.																							S	T	T										S	S														T	T
Template Predicted Secondary structure																								.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	S	W	R	E	A	E	L	V	W	V	L	N	K	C	Q	A	K	M	F	F	A	P	T	L	F	K	Q	T	R	P	V	D	L	I	L	P	L	Q	N	Q	L	P	Q	L	Q	Q	I	V	G	V	D	K	L	A	P	A	T	S	S	L	S	L	S	Q	I	I	A	D	N	T	S	L	T	T	A	I	T	T
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	S	I	P	A	D	R	V	Q	R	I	A	E	N	S	G	A	K	L	L	L	S	A	T	A	V	T	V	T	D	L	P	V	R	I	V	S	E	D	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	I	F	F	T	H	K	G	N	T	P	N	P	E	H	A	V
Template Known Secondary structure			T	T	S													T							S	S				S	S			S	S					T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T					G	G	G	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		H	G	D	E	L	A	A	V	L	F	T	S	G	T	E	G	L	P	K	G	V	M	L	T	H	N	N	I	L	A	S	E	R	A	Y	C	A	R	L	N	L	T	W	Q	D	V	F	M	M	P	A	P	L	G	H	A	T	G	F	L	H	G	V	T	A	P	F	L	I	G	A	R	S	V	L	L	.	.	D	I
Query Conservation																																																																														.	.
Alig confidence														.	.	.	.	.																																																												.	.
Template Conservation														.	.	.	.	.
Template Sequence		K	G	D	E	N	F	Y	I	I	Y	T	S	.	.	.	.	.	P	K	G	V	Q	I	T	Y	N	C	L	V	S	F	T	K	W	A	V	E	D	F	N	L	Q	T	G	Q	V	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	I	Y	P	S	L	V	T	G	G	T	L	W	A	I	D	K	D	M	I
Template Known Secondary structure			T	T	S									.	.	.	.	.																						T	T			S	S							S		T	T	S	G	G	G										T	T
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		F	T	P	D	A	C	L	A	L	L	E	Q	Q	R	C	T	C	M	L	G	A	T	P	F	V	Y	D	L	L	N	V	L	E	K	Q	P	A	D	L	S	A	L	R	F	F	L	C	G	G	T	T	I	P	K	K	V	A	R	E	C	Q	Q	.	.	R	G	I	K	L	L	S	V	Y	G	S	T	E	S	S	P
Query Conservation																																																																.	.
Alig confidence																																																																.	.
Template Conservation
Template Sequence		A	R	P	K	D	L	F	A	S	L	E	Q	S	D	I	Q	V	W	T	S	T	P	S	F	A	E	M	C	L	M	E	A	S	F	S	E	S	M	L	P	N	M	K	T	F	L	F	C	G	E	V	L	P	N	E	V	A	R	K	L	I	E	R	F	P	K	A	T	I	M	N	T	Y	G	P	T	E	A	T	V
Template Known Secondary structure			S												T																T	S	T	T		S	T	T	T	S	T	T								S	S															T	T										G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		342	.	.	.	.	.	.	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.
Predicted Secondary structure												.	.	.																																																												.	.
Query SS confidence												.	.	.																																																												.	.
Query Sequence		H	A	V	V	N	L	D	D	P	L	.	.	.	S	R	F	M	H	T	D	G	Y	A	A	A	G	V	E	I	K	V	V	D	D	A	R	K	T	L	P	P	G	C	E	G	E	E	A	S	R	G	P	N	V	F	M	G	Y	F	D	E	P	E	L	T	A	R	A	L	D	E	E	.	.	G	W	Y	Y	S	G
Query Conservation												.	.	.																																																												.	.
Alig confidence												.	.	.																																																												.	.
Template Conservation
Template Sequence		A	V	T	G	I	H	V	T	E	E	V	L	D	Q	Y	K	S	L	P	V	G	Y	C	K	S	D	C	R	L	L	I	M	K	E	D	G	T	I	A	P	D	G	E	K	G	E	I	V	I	V	G	P	S	V	S	V	G	Y	L	G	S	P	E	L	T	E	K	A	F	T	M	I	D	G	E	R	A	Y	K	T
Template Known Secondary structure			S														S	S								T	T								S	S	S	S	B			T	T									S	T	T	S		S		B	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		D	L	C	R	M	D	E	A	G	Y	I	K	I	T	G	R	K	K	D	I	I	V	R	G	G	E	N	I	S	S	R	E	V	E	D	I	L	L	Q	H	P	K	I	H	D	A	C	V	V	A	M	S	D	E	R	L	G	E	R	S	C	A	Y	V	V	L	K	A	P	H	H	S	L	S	L	E	.	.	E	V
Query Conservation																																																																														.	.
Alig confidence																																																																														.	.
Template Conservation
Template Sequence		G	D	A	G	Y	V	E	N	G	L	L	F	Y	N	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	H	H	L	R	A	C	S	Y	V	E	G	A	V	I	V	P	I	K	K	G	E	K	Y	D	Y	L	L	A	V	V	V	P	G	E	H	S	F	E	K	E	F	K	L	T	S	A
Template Known Secondary structure									T	T								G	G	G					S	S															S	T	T											S	S	S	S												S				S	S
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	F	F	S	R	K	R	V	A	K	Y	K	Y	P	E	H	I	V	V	I	E	K	L	P	R	T	T	S	G	K	I	Q	K	F	L	L	R	K	D	I	M	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	K	E	L	N	E	R	L	P	N	Y	M	I	P	R	K	F	M	Y	Q	S	S	I	P	M	T	P	N	G	K	V	D	R	K	K	L	L	S	E	V	T	A
Template Known Secondary structure								T	T	S		G	G	G	S		S						S				B		T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.