Job Description P38135 Confidence 100.00% Date Thu Jan 5 11:58:04 GMT 2012 Rank 30 Aligned Residues 336 % Identity 16% Template c2y27B_ PDB info PDB header:ligase Chain: B: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak1 in complex with atp from2 burkholderia cenocepacia Resolution 1.60 Å

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		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		A	I	T	T	H	G	D	E	L	A	A	V	L	F	T	S	G	T	E	G	L	P	K	G	V	M	L	T	H	N	N	I	L	A	S	E	R	A	Y	C	A	R	L	N	.	.	.	L	T	W	Q	D	V	F	M	M	P	A	P	L	G	H	A	T	G	F	L	H	G	V	T	A	P	F	L	I	G	A	R	S
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.
Template Conservation
Template Sequence		X	F	A	V	P	Q	D	R	I	S	R	I	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	A	A	D	I	D	T	W	A	N	L	V	A	R	S	I	R	A	A	G	A	R	R	G	D	K	V	H	V	S	Y	G	Y	G	L	F	T	G	G	L	G	A	H	Y	G	A	E	R	A	G	L	T	V
Template Known Secondary structure		T			S		G	G	G										S	S	S	S																									T	T			T	T							S			S	S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																																														.	.																								.
Query SS confidence																																														.	.																								.
Query Sequence		V	L	L	D	I	F	T	P	D	A	C	L	A	L	L	E	Q	Q	R	C	T	C	M	L	G	A	T	P	F	V	Y	D	L	L	N	V	L	E	K	Q	P	A	D	L	.	.	S	A	L	R	F	F	L	C	G	G	T	T	I	P	K	K	V	A	R	E	C	Q	Q	.	R	G	I	K	L	L	S	V	Y	G
Query Conservation																																														.	.																								.
Alig confidence																																														.	.																								.
Template Conservation
Template Sequence		I	P	F	G	G	G	Q	T	E	K	Q	V	Q	L	I	Q	D	F	R	P	D	I	I	X	V	T	P	S	Y	X	L	S	I	A	D	E	I	E	R	Q	G	L	D	P	V	Q	S	S	L	R	I	G	I	F	G	A	E	P	W	T	N	D	X	R	V	A	I	E	Q	R	X	G	I	D	A	V	D	I	Y	G
Template Known Secondary structure						S																S																			T	T			G	G	G	S	S								S	S															T	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		S	T	E	S	S	P	H	A	V	V	N	L	D	D	P	L	S	R	F	M	H	T	D	G	Y	A	A	A	G	V	E	I	K	V	V	D	D	A	.	R	K	T	L	P	P	G	C	E	G	E	E	A	S	R	G	P	N	V	F	M	G	Y	F	D	E	P	E	L	T	A	R	A	L	D	E	E	G	W	Y	Y
Query Conservation																																								.
Alig confidence													.	.	.																									.																										.	.	.	.	.	.	.
Template Conservation													.	.	.																																																			.	.	.	.	.	.	.
Template Sequence		L	S	E	V	X	G	P	G	V	A	S	.	.	.	E	C	V	E	T	K	D	G	P	T	I	W	E	D	H	F	Y	P	E	I	I	D	P	E	T	G	E	V	L	P	D	G	E	L	G	E	L	V	F	T	S	L	T	K	E	A	L	P	I	I	.	.	.	.	.	.	.	R	Y	R	T	R	D	L	T	R
Template Known Secondary structure			T	T	T	T							.	.	.			T	T	T		S	S					T	T	T								T	T	T			B			T	T	S									S	S		S	S	S				.	.	.	.	.	.	.	S
Template Predicted Secondary structure													.	.	.																																																			.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.								300	.	.	.	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		S	G	D	L	C	R	M	D	E	A	G	Y	I	K	I	T	G	R	K	K	D	I	I	V	R	G	G	E	N	I	S	S	R	E	V	E	D	I	L	L	Q	H	P	K	I	H	D	A	C	V	V	A	M	S	D	E	R	L	G	E	R	S	C	A	Y	V	V	L	K	A	P	H	H	S	L	S	L	E	.	E
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		L	L	P	G	T	A	R	T	X	R	R	X	E	K	I	T	G	R	S	D	D	X	X	I	V	R	G	V	N	V	F	P	T	Q	I	E	E	Q	L	L	K	Q	R	A	L	A	P	H	Y	Q	I	V	L	T	K	E	G	P	L	D	V	L	T	L	N	V	E	P	C	P	E	T	A	P	D	T	A	A	I	Q
Template Known Secondary structure						S	S	S	S	S										G	G	G					T	T													T	T		T	T	B		S										T	T										B		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510				.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		V	V	A	F	F	S	R	K	R	V	A	K	Y	K	Y	P	E	.	.	.	H	I	V	V	I	E	K	L	P	R	T	T	S	G	K	I	Q	K
Query Conservation																			.	.	.
Alig confidence																			.	.	.												.
Template Conservation																																	.
Template Sequence		V	A	K	Q	A	L	A	Y	D	I	K	S	L	I	G	V	T	A	V	I	N	V	L	P	V	N	G	I	E	R	S	.	V	G	K	A	R	R
Template Known Secondary structure																										T	T		S				.	S	S	S
Template Predicted Secondary structure																																	.
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions