Job Description P38135 Confidence 100.00% Date Thu Jan 5 11:58:04 GMT 2012 Rank 19 Aligned Residues 484 % Identity 24% Template c2v7bB_ PDB info PDB header:ligase Chain: B: PDB Molecule:benzoate-coenzyme a ligase; PDBTitle: crystal structures of a benzoate coa ligase from2 burkholderia xenovorans lb400 Resolution 1.84 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	A	D	Y	W	Q	Q	T	A	R	A	M	P	D	K	I	A	V	V	D	N	H	G	A	S	Y	T	Y	S	A	L	D	H	A	A	S	C	L	A	N	W	M	L	A	K	G	I	E	S	G	D	R	I	A	F	Q	L	P	G	W	C	E	F	T	V	I	Y	L	A	C	L	K	I	G	A	V	S	V	P
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		N	F	A	A	Y	L	F	R	L	N	E	T	R	A	G	K	T	A	Y	I	D	D	T	.	G	S	T	T	Y	G	E	L	E	E	R	A	R	R	F	A	S	A	L	R	T	L	G	V	H	P	E	E	R	I	L	L	V	M	L	D	T	V	A	L	P	V	A	F	L	G	A	L	Y	A	G	V	V	P	V	V
Template Known Secondary structure											T	G	G	G	T	T	S						S	S	.																						T	T			T	T									S	S	T													T
Template Predicted Secondary structure																									.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	P	S	W	R	E	A	E	L	V	W	V	L	N	K	C	Q	A	K	M	F	F	A	P	T	L	F	K	Q	T	R	P	V	D	L	I	L	P	L	Q	N	Q	L	P	Q	L	Q	Q	I	V	G	V	D	K	L	A	P	A	T	S	S	L	S	L	S	Q	I	I	A	D	N	T	S	L	T	T	A	I	T
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	T	L	L	T	P	A	D	Y	V	Y	M	L	T	H	S	H	A	R	A	V	I	A	S	G	A	L	V	Q	N	V	T	Q	A	L	E	S	A	G	C	Q	L	I	V	S	Q	P	L	A	P	L	F	E	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	A	A	A	P	A
Template Known Secondary structure				T	T														T		S						G	G	G																								B					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																		.	160	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		T	H	G	D	E	L	A	A	V	L	F	T	S	G	T	E	G	L	P	K	G	V	M	L	T	H	N	N	I	L	A	S	E	R	A	Y	C	A	R	L	N	L	T	W	Q	D	V	F	M	M	P	A	P	L	G	H	A	T	G	F	L	H	G	V	T	A	P	F	.	.	L	I	G	A	R	S	V	L	L	D
Query Conservation																																																																						.	.
Alig confidence																																																																						.	.
Template Conservation
Template Sequence		A	K	A	A	A	T	G	C	D	D	I	A	F	W	L	Y	S	K	P	K	G	T	V	H	T	H	A	N	L	Y	W	T	A	E	L	Y	A	K	P	I	L	G	I	A	E	N	D	V	V	F	S	A	A	K	L	F	F	A	Y	G	L	G	N	G	L	T	F	P	L	S	V	G	A	T	A	I	L	M	A	E
Template Known Secondary structure		S	S						T	T	S																										T									T	T						S	S		T	T	S								T							T								S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		I	F	T	P	D	A	C	L	A	L	L	E	Q	Q	R	C	T	C	M	L	G	A	T	P	F	V	Y	D	L	L	N	V	L	E	K	Q	P	A	D	L	S	A	L	R	F	F	L	C	G	G	T	T	I	P	K	K	V	A	R	E	C	Q	Q	.	R	G	I	K	L	L	S	V	Y	G	S	T	E	S	S	P
Query Conservation																																																																	.
Alig confidence																																																																	.
Template Conservation
Template Sequence		R	P	T	A	D	A	I	F	A	R	L	V	E	H	R	P	T	V	F	Y	G	V	P	T	L	Y	A	N	M	L	V	S	P	N	L	P	A	R	A	D	V	A	I	R	I	C	T	S	A	G	E	A	L	P	R	E	I	G	E	R	F	T	A	H	F	G	C	E	I	L	D	G	I	G	S	T	E	M	L	H
Template Known Secondary structure															T			S														T		T	T				G	G	G										S	S															S										T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	V	V	N	L	D	D	P	L	S	R	F	M	H	T	D	G	Y	A	A	A	G	V	E	I	K	V	V	D	D	A	R	K	T	L	P	P	G	C	E	G	E	E	A	S	R	G	P	N	V	F	M	G	Y	F	D	E	P	E	L	T	A	R	A	L	D	E	E	G	W	Y	Y	S	G	D	L	C	R	M
Query Conservation
Alig confidence								.	.																																																										.
Template Conservation								.	.																																																										.
Template Sequence		I	F	L	S	N	R	.	.	A	G	A	V	E	Y	G	T	T	G	R	P	V	P	G	Y	E	I	E	L	R	D	E	A	G	H	A	V	P	D	G	E	V	G	D	L	Y	I	K	G	P	S	A	A	V	M	Y	W	N	N	R	E	K	S	R	A	T	.	F	L	G	E	W	I	R	S	G	D	K	Y	C	R
Template Known Secondary structure								.	.	T	T				T	T	S						T	T								T	T	S		B			T	T	S									T	T					B	T	T									.			T	T
Template Predicted Secondary structure								.	.																																																										.
Template SS confidence
		340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	A	G	Y	I	K	I	T	G	R	K	K	D	I	I	V	R	G	G	E	N	I	S	S	R	E	V	E	D	I	L	L	Q	H	P	K	I	H	D	A	C	V	V	A	M	S	D	E	R	L	G	E	R	S	C	A	Y	V	V	L	K	A	P	H	H	S	L	S	L	E	E	V	V	A	F	F	S	R	K
Query Conservation
Alig confidence																			.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		L	P	N	G	C	Y	V	Y	A	G	R	S	D	D	M	L	K	.	.	.	.	Y	V	S	P	V	E	V	E	M	V	L	V	Q	H	D	A	V	L	E	A	A	V	V	G	V	D	H	G	G	L	V	K	T	R	A	F	V	V	L	K	R	E	F	A	P	S	E	I	L	A	E	E	L	K	A	F	V	K	D
Template Known Secondary structure			T	T	S								G	G	G		B		.	.	.	.		B										T	T	S	T	T												T	T												T	T																	T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.					.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	A	K	Y	K	Y	P	E	H	I	V	V	I	E	K	L	P	R	T	T	S	G	K	I	Q	K	F	L	L	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	A	P	H	K	Y	P	R	D	I	V	F	V	D	D	L	P	K	T	A	T	G	K	I	Q	R	F	K	L	R	E
Template Known Secondary structure		T	S		T	T	S	S		S						S				B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.