Job Description P38135 Confidence 100.00% Date Thu Jan 5 11:58:04 GMT 2012 Rank 12 Aligned Residues 490 % Identity 22% Template c1amuB_ PDB info PDB header:peptide synthetase Chain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine Resolution 1.90 Å

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		9	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		E	Q	R	R	A	A	Y	.	.	R	Q	Q	G	L	W	G	D	A	S	L	A	D	Y	W	Q	Q	T	A	R	A	M	P	D	K	I	A	V	V	D	N	H	G	A	S	Y	T	Y	S	A	L	D	H	A	A	S	C	L	A	N	W	M	L	A	K	G	I	E	S	G	D	R	I	A	F	Q	L	P	G	W	C
Query Conservation									.	.
Alig confidence									.	.																																	.
Template Conservation																																											.
Template Sequence		E	Q	Y	L	F	A	V	N	N	T	K	A	E	Y	P	R	D	K	T	I	H	Q	L	F	E	E	Q	V	S	K	R	P	N	N	V	A	I	V	C	E	N	.	E	Q	L	T	Y	H	E	L	N	V	K	A	N	Q	L	A	R	I	F	I	E	K	G	I	G	K	D	T	L	V	G	I	M	M	E	K	S	I
Template Known Secondary structure								T	T								T	T															T	T	S						T	T	.																							T			T	T									S	S
Template Predicted Secondary structure																																											.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	T	V	I	Y	L	A	C	L	K	I	G	A	V	S	V	P	L	L	P	S	W	R	E	A	E	L	V	W	V	L	N	K	C	Q	A	K	M	F	F	A	P	T	L	F	K	Q	T	R	P	V	D	L	I	L	P	L	Q	N	Q	L	P	Q	L	Q	Q	I	V	G	V	D	K	L	A	P	A	T	S	S
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	F	I	G	I	L	A	V	L	K	A	G	G	A	Y	V	P	I	D	I	E	Y	P	K	E	R	I	Q	Y	I	L	D	D	S	Q	A	R	M	L	L	T	Q	K	H	L	V	H	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	H	N	Q	F	N	G	Q	V	E
Template Known Secondary structure													T	T								T	T	S															S						G	G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G						S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.																						150	.	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	L	S	Q	I	I	A	D	N	T	S	L	T	T	A	I	T	T	H	G	D	E	L	A	A	V	L	F	T	S	G	T	E	G	L	P	K	G	V	M	L	T	H	N	N	I	L	A	S	E	R	A	Y	C	A	R	L	N	L	T	W	Q	D	V	F	M	M	P	A	P	L	G	H	A	T	G	F	L	H
Query Conservation
Alig confidence																																.	.	.	.	.
Template Conservation																																.	.	.	.	.
Template Sequence		I	F	E	E	D	T	I	K	I	R	E	G	T	N	L	H	V	P	S	K	S	T	D	L	A	Y	V	I	Y	T	.	.	.	.	.	N	P	K	G	T	M	L	E	H	K	G	I	S	N	L	K	V	F	F	E	N	S	L	N	V	T	E	K	D	R	I	G	Q	F	A	S	I	S	F	D	A	S	V	W	E
Template Known Secondary structure						S	S	G	G	G	S			S								T	T	S								.	.	.	.	.																						T	S				T	T							S		T	T	S	T
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190						.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	T	A	P	F	L	I	G	A	R	S	V	L	L	D	I	F	T	P	D	A	C	L	A	L	L	E	Q	Q	R	C	T	C	M	L	G	A	T	P	F	V	Y	D	L	L	N	V	L	E	K	Q	P	A	D	L	S	A	L	R	F	F	L	C	G	G	T	T	I	P	K	K	V	A	R	E	C	Q	Q	R
Query Conservation
Alig confidence																																															.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		M	F	M	A	L	L	T	G	A	S	L	Y	I	I	L	K	D	T	I	N	D	F	V	K	F	E	Q	Y	I	N	Q	K	E	I	T	V	I	T	L	P	P	T	Y	V	V	.	.	.	.	H	L	D	P	E	R	I	L	S	I	Q	T	L	I	T	A	G	S	A	T	S	P	S	L	V	N	K	W	K	E	K
Template Known Secondary structure							T	T	T												T												T	T												T	.	.	.	.	T	S		T	T	T			S		S						S	S											T	T	T
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	K	L	L	S	V	Y	G	S	T	E	S	S	P	H	A	V	V	N	L	D	D	P	L	S	R	F	M	H	T	D	G	Y	A	A	A	G	V	E	I	K	V	V	D	D	A	R	K	T	L	P	P	G	C	E	G	E	E	A	S	R	G	P	N	V	F	M	G	Y	F	D	E	P	E	L	T	A	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	Y	I	N	A	Y	G	P	T	E	T	T	I	C	A	T	T	W	V	A	T	K	E	T	I	G	H	S	V	P	I	G	A	P	I	Q	N	T	Q	I	Y	I	V	D	E	N	L	Q	L	K	S	V	G	E	A	G	E	L	C	I	G	G	E	G	L	A	R	G	Y	W	K	R	P	E	L	T	S	Q	K
Template Known Secondary structure		S									G	G	G	S	S		S							S	S				S	S				B				T	T								T	T	S		B			T	T										T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		407	.	.	410							.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure						.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.
Query Sequence		L	D	E	E	.	.	.	.	.	.	G	W	Y	Y	S	G	D	L	C	R	M	D	E	A	G	Y	I	K	I	T	G	R	K	K	D	I	I	V	R	G	G	E	N	I	S	S	R	E	V	E	D	I	L	L	Q	H	P	K	I	H	D	A	C	V	V	A	M	S	D	E	R	L	G	E	R	S	C	A	Y	V
Query Conservation						.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	D	N	P	F	V	P	G	E	K	L	Y	K	T	G	D	Q	A	R	W	L	S	D	G	N	I	E	Y	L	G	R	I	D	N	Q	V	K	I	R	G	H	R	V	E	L	E	E	V	E	S	I	L	L	K	H	M	Y	I	S	E	T	A	V	S	V	H	K	D	H	Q	E	Q	P	Y	L	C	A	Y	F
Template Known Secondary structure						S	S	S	T	T	S													T	T	S								G	G	G					T	T														T	S	T	T												T	T	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	K	A	P	H	H	S	L	S	L	E	E	V	V	A	F	F	S	R	K	R	V	A	K	Y	K	Y	P	E	H	I	V	V	I	E	K	L	P	R	T	T	S	G	K	I	Q	K	F	L	L	R	K
Query Conservation
Alig confidence									.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		V	S	E	K	H	I	P	.	.	.	.	L	E	Q	L	R	Q	F	S	S	E	E	L	P	T	Y	M	I	P	S	Y	F	I	Q	L	D	K	M	P	L	T	S	N	G	K	I	D	R	K	Q	L	P	E
Template Known Secondary structure				S	S				.	.	.	.												S		G	G	G	S		S						S	S			B		T	T	S	S	B		G	G	G	S
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		477	.	.	480	.	.	.					.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.