|   |
2 | . | . | |
. | . | . | . | . | 10 | . | . | . | . | . | |
|
. | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  | . |  |  |  |  |  |  |
|
|  |  |  | . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | E | L | . |
N | F | S | Q | T | L | G | N | H | C | L | . |
. |
T | I | N | E | T | L | P | A | N | G | I | T | A | I | F | G | V | S | G | A | G | K | T | S | L | I | N | A | I | S | G | L | T | R | P | Q | K | G | R | I | V | L | N | G | R | V | L | N | D | A | E | K | G | I | C | L | T | P | E | K | R | R | V |
Query Conservation |   |
|   |
| . |
|   |   |
|   |   |
|   |   |   |
| . | . |   |
|
|
|   |
|   |   |
|
|   |   |   |
|   |
|   |
|
|
|
|
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
Alig confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |
|
|   |   |
|
|
|   |
|   |   |
|
|   |   |   |
|   |
|   |
|
|
|
|
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |
|
Template Sequence |   |
V | V | V | K | D | L | R | K | R | I | G | K | K | E | I | L | K | G | I | S | F | E | I | E | E | G | E | I | F | G | L | I | G | P | N | G | A | G | K | T | T | T | L | R | I | I | S | T | L | I | K | P | S | S | G | I | V | T | V | F | G | K | N | V | V | E | E | P | H | E | V | . |
. |
. |
. |
. |
R | K | L | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |
|
| T | T | S | S |  |  |  |  |  |  |  |  | T | T | S | S |
|
| S |  |  |  |  |  |  | T | T |  |  | T | T | T |
|  |  |  |  | . | . | . | . | . |  | T | T |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |
|
|
|
|  |  |  |  | . | . | . | . | . |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
|
|
|
. | . | . | . |
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Y | V | F | Q | D | A | R | L | F | P | H | Y | K | V | R | G | N | L | R | Y | G | M | . |
. |
. |
. |
. |
. |
S | K | S | M | V | D | Q | F | D | K | L | V | A | L | L | G | I | E | P | L | L | D | R | L | P | G | S | L | S | G | G | E | K | Q | R | V | A | I | G | R | A | L | L | T | A | P | E | L | L | L | L |
Query Conservation |   |
  |   |
|   |
|   |   |   |
|   |   |   |   |
|
|   |
|
|
|   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |
|
|
|   |
|
|
|
|
|   |   |   |
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |
|
|
|   |
|
|   |
|
|   |   |   |
|   |
|
|
|
|
Template Sequence |   |
S | Y | L | P | E | E | A | G | A | Y | R | N | M | Q | G | I | E | Y | L | R | F | V | A | G | F | Y | A | S | S | S | S | E | I | E | E | M | V | E | R | A | T | E | I | A | G | L | G | E | K | I | K | D | R | V | S | T | Y | S | K | G | M | V | R | K | L | L | I | A | R | A | L | M | V | N | P | R | L | A | I | L |
Template Known Secondary structure |   |
 |  |  |
| T | T |
|
|
|
| T | T | S | B |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| G | G | G | G | G | S | B | G | G | G |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
  |
  |   |
153 | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | E | P | L | A | S | L | D | I | P | R | K | R | E | L | L | P | Y | L | Q | R | L | T | R | E | I | N | I | P | M | L | Y | V | S | H | S | L | D | E | I | L | H | L | A | D | R | V | M | V | L | E | N | G | Q | V | K | A | F | G | A | L | E | E | V | W | G | S | S | V | M | N | P | W | L | P | K | E |
Query Conservation |   |
|
|
|
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |   |
|   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   | . |
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |   |
|   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|
Template Sequence |   |
D | E | P | T | S | G | L | D | V | L | N | A | R | E | V | R | K | I | L | K | Q | A | S | Q | E | . |
G | L | T | I | L | V | S | S | H | N | M | L | E | V | E | F | L | C | D | R | I | A | L | I | H | N | G | T | I | V | E | T | G | T | V | E | E | L | K | E | R | Y | K | A | Q | N | I | E | E | V | F |
Template Known Secondary structure |   |
 | S | T | T | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |
|  |  |  |  |  |  |
|
|  |  |  |  | T | T | T |
| S |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
159 | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | |
. | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . |
  |