Job Description P09833 Confidence 97.12% Date Thu Jan 5 11:02:30 GMT 2012 Rank 171 Aligned Residues 134 % Identity 12% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	N	G	I	T	A	I	F	G	V	S	G	A	G	K	T	S	L	I	N	A	I	S	G	L	T	R	P	Q	K	G	R	I	V	L	N	G	R	V	L	N	D	A	E	K	G	I	C	L	T	P	E	K	R	R	V	G	Y	V	F	Q	D	A	R	L	F	P	H	Y	K	V	R	G	N	L	R	Y	G	M
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	H	G	F	S	V	V	I	A	A	S	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F
Template Known Secondary structure			S										T	T	S	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T										T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.																								.	150	.	.	.	.	.	.	.	.	.	160	.																.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		S	K	S	M	V	D	Q	F	D	K	L	V	A	L	L	G	I	E	P	L	L	D	R	L	P	G	S	L	S	G	G	E	K	Q	R	V	A	I	G	R	A	L	L	T	A	P	E	L	L	L	L	D	E	P	L	.	A	S	L	D	I	P	R	K	R	E	L	L	P	Y	L	Q	R	L	T	R	E	I	N	I
Query Conservation																																																									.
Alig confidence																																										.	.														.
Template Conservation																																										.	.
Template Sequence		R	A	G	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A	A	V	A	Y	D	A	I	Q	H	A	K	.	.	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I
Template Known Secondary structure																T	T							S	T	T																.	.			T		S								S	S			S	S	S																S
Template Predicted Secondary structure																																										.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	L	Y	V	S	H	S	L	D	E	I	L	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	G	D	A	L	A	G	N	A	I	V	E	Q	A
Template Known Secondary structure						T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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