Job Description P09833 Confidence 96.00% Date Thu Jan 5 11:02:30 GMT 2012 Rank 333 Aligned Residues 146 % Identity 13% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	A	I	F	G	V	S	G	A	G	K	T	S	L	I	N	A	I	S	G	L	T	R	P	Q	K	G	R	I	V	L	N	G	R	V	L	N	D	A	E	K	G	I	C	L	T	P	E	K	R	R	V	G	Y	V	F	Q	D	A	R	L	F	P	H	Y	K	V	R	G	N	L	R	Y	G	M	S	K	S	M
Query Conservation
Alig confidence																																																											.	.
Template Conservation																																																											.	.
Template Sequence		I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	.	.	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K
Template Known Secondary structure									T	T	S	S														T	T	T											S	S	T											G	G	G	T				.	.				T	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		V	D	Q	F	D	K	L	.	V	A	L	L	G	I	E	P	L	L	D	R	L	P	G	S	L	S	G	G	E	K	Q	R	V	A	I	G	R	A	L	L	T	A	P	E	L	L	L	L	D	E	P	L	A	S	L	D	I	P	R	K	R	E	L	L	P	Y	L	Q	R	L	T	R	E	I	N	I	P	M	L	Y
Query Conservation									.
Alig confidence									.																.	.	.	.	.	.	.																					.							.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.																					.							.	.	.	.	.	.
Template Sequence		S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	.	.	.	.	.	.	.	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	.	T	I	G	Q	Q	A	.	.	.	.	.	.	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I
Template Known Secondary structure			T	T		S										S	S								.	.	.	.	.	.	.												S								G	.	G	G	G	G	G		.	.	.	.	.	.										S		T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.																					.							.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.								.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		185	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		246	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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