Job Description P09833 Confidence 100.00% Date Thu Jan 5 11:02:30 GMT 2012 Rank 4 Aligned Residues 333 % Identity 28% Template c2it1B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii Resolution 1.94 Å

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		2	.	.		.	.	.	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure					.												.	.
Query SS confidence					.												.	.
Query Sequence		L	E	L	.	N	F	S	Q	T	L	G	N	H	C	L	.	.	T	I	N	E	T	L	P	A	N	G	I	T	A	I	F	G	V	S	G	A	G	K	T	S	L	I	N	A	I	S	G	L	T	R	P	Q	K	G	R	I	V	L	N	G	R	V	L	N	D	A	E	K	G	I	C	L	T	P	E	K	R	R	V
Query Conservation					.												.	.
Alig confidence					.												.	.																																																								.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.
Template Sequence		I	K	L	E	N	I	V	K	K	F	G	N	F	T	A	L	N	N	I	N	L	K	I	K	D	G	E	F	M	A	L	L	G	P	S	G	S	G	K	S	T	L	L	Y	T	I	A	G	I	Y	K	P	T	S	G	K	I	Y	F	D	E	K	D	V	T	E	L	P	P	K	D	R	.	.	.	.	.	.	N	V
Template Known Secondary structure												T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S						.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																										.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		G	Y	V	F	Q	D	A	R	L	F	P	H	Y	K	V	R	G	N	L	R	Y	G	M	.	.	.	.	.	.	S	K	S	M	V	D	Q	F	D	K	L	V	A	L	L	G	I	E	P	L	L	D	R	L	P	G	S	L	S	G	G	E	K	Q	R	V	A	I	G	R	A	L	L	T	A	P	E	L	L	L	L
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	V	F	Q	N	W	A	L	Y	P	H	M	T	V	Y	K	N	I	A	F	P	L	E	L	R	K	A	P	R	E	E	I	D	K	K	V	R	E	V	A	K	M	L	H	I	D	K	L	L	N	R	Y	P	W	Q	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	L	V	K	E	P	E	V	L	L	L
Template Known Secondary structure						T	T					T	T	S													T	T																	T	T		G	G	G	T	T	S		G	G	G	S															T	T			S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	P	L	A	S	L	D	I	P	R	K	R	E	L	L	P	Y	L	Q	R	L	T	R	E	I	N	I	P	M	L	Y	V	S	H	S	L	D	E	I	L	H	L	A	D	R	V	M	V	L	E	N	G	Q	V	K	A	F	G	A	L	E	E	V	W	G	S	S	V	M	N	P	W	L	P	K	E	Q	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	P	L	S	N	L	D	A	L	L	R	L	E	V	R	A	E	L	K	R	L	Q	K	E	L	G	I	T	T	V	Y	V	T	H	D	Q	A	E	A	L	A	M	A	D	R	I	A	V	I	R	E	G	E	I	L	Q	V	G	T	P	D	E	V	Y	Y	K	P	K	Y	K	F	V	G	G	F	L	G	N	P
Template Known Secondary structure			S	G	G	G	G	S																				T								S										S							T	T														S		S	B							S	B	T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		S	I	L	K	V	T	V	L	E	H	H	P	H	Y	A	M	T	A	L	.	A	L	G	D	Q	H	L	W	V	N	K	L	D	E	P	L	Q	A	A	L	R	I	R	I	Q	A	S	D	V	S	L	V	L	Q	P	P	Q	Q	T	S	I	R	N	V	L	R	A	K	V	V	N	S	Y	D	D	N	G	Q	V	E
Query Conservation																					.
Alig confidence																					.																																							.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		P	M	N	F	V	E	A	K	V	E	D	G	K	L	V	I	T	E	K	S	K	L	P	I	P	K	Q	Y	V	E	I	V	K	E	T	G	I	T	E	V	I	I	G	F	R	P	H	D	A	E	I	V	K	G	E	G	E	G	.	.	.	.	.	.	I	V	G	E	V	Y	S	F	E	P	L	G	R	E	Q	I
Template Known Secondary structure		B										T	T				S	S	S	S							G	G	G								T										G	G	G						S	S		S	S	.	.	.	.	.	.												S	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.							.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	E	V	G	G	K	T	L	W	A	R	I	S	P	W	A	R	D	E	L	A	I	K	P	G	L	W	L	Y	A	Q	I	K	S	V	S	I
Query Conservation
Alig confidence																	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		V	T	V	S	V	N	D	S	I	V	K	V	F	A	P	.	.	.	.	E	G	E	H	F	S	F	G	E	K	V	T	I	K	V	K	E	E	L	L
Template Known Secondary structure							T	T									.	.	.	.	T	T					T	T									G	G	G
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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