Return to main results Retrieve Phyre Job Id

Job DescriptionP09833
Confidence100.00%DateThu Jan 5 11:02:30 GMT 2012
Rank46Aligned Residues199
% Identity26%Templatec2cbzA_
PDB info PDB header:transportChain: A: PDB Molecule:multidrug resistance-associated protein 1; PDBTitle: structure of the human multidrug resistance protein 12 nucleotide binding domain 1
Resolution1.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.. .....10. .... ....20.........30.........40.........50.........60.........70......
Predicted Secondary structure  .
...
.


























Query SS confidence 


.






. . .



.




























































Query Sequence  LEL. NFSQTLG. . . NHCL. TINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKR
Query Conservation 
 
.
  
  
...   
. 


 
  

   
 
 








  
 
      
 
   
                
Alig confidence 


.






...



.











































.................
Template Conservation 
    
   
      

  

  
  

   
 
 








  
 
   
  
 
   
.................
Template Sequence  ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG. . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
TTS

S
TT

STTSSTT
S
S.................
Template Predicted Secondary structure 





























.................
Template SS confidence 















































































   644.....650.........660.........670.........680.........690.........700......
 
   77..80.........90.........100.........110.........120.... .....130.........140.....
Predicted Secondary structure 










...........






Query SS confidence 















































. . . . . . . . . . .




















Query Sequence  RVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDR. . . . . . . . . . . LPGSLSGGEKQRVAIGRALLT
Query Conservation   
  
 
   
    

 


                    
      ...........    

 
  


 




  
Alig confidence 












.











.




















...........




















Template Conservation   
    
      . 

   
     .                                    

 

  

 

 

  
Template Sequence  SVAYVPQQAWIQN. DSLRENILFGCQ. LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS
Template Known Secondary structure 

SS



S.TTS
.

TTTT
TTSTTGGGSSTTSB


Template Predicted Secondary structure 












.







.


























Template SS confidence 















































































   707..710......... 720.........730. ........740.........750.........760.........770.........780....
 
   146...150.........160.........170..... ....180.........190.........200.........210.........220
Predicted Secondary structure 








.













Query SS confidence 





























.












































Query Sequence  APELLLLDEPLASLDIPRKRELLPYLQRLT. REINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSS
Query Conservation   
 







  

      
   
    .   
 


 


         
 
 

  
 
   
    
    
Alig confidence 





























.
















.


























Template Conservation   
 







 


      
   
          


  

     .   
 
  
  
 
   
    
    
Template Sequence  NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL. PQVDVIIVMSGGKISEMGSYQELLARD
Template Known Secondary structure 

SSTTTTS
TTSTTSTTTTS
S
STTG.GGSSTT
T
Template Predicted Secondary structure 


















.







Template SS confidence 











































































   785....790.........800.........810.........820.........830.. .......840.........850.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions