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Job DescriptionP09833
Confidence100.00%DateThu Jan 5 11:02:30 GMT 2012
Rank7Aligned Residues335
% Identity26%Templatec1q1bD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  LEL. NFSQTLGNHCL. . TINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRV
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Template Sequence  VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA. . . . . . ERGV
Template Known Secondary structure 
TT

TT

SGGGSTTTSS


SSTT
TT

SS......TT

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Query Sequence  GYVFQDARLFPHYKVRGNLRYGM. . . . . . SKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLL
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Template Sequence  GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL
Template Known Secondary structure 

B
S




TTS
TTTTTTSSSSTTTTTTTTTGGGT
TT
SS



GGGTTTSSSSTTTT

S
B
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   78.80.........90.........100.........110.........120.........130.........140.........150.......
 
   153......160.........170.........180.........190.........200.........210.........220.........230..
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Query Sequence  DEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQS
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Template Sequence  DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSP
Template Known Secondary structure  SSTTTT

TTTTT

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STT
S
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   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
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Query Sequence  . . SILKVTVLEHHPHYAMTALALGDQHL. . . WVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDN
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Template Sequence  KMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLP. . . . . . SDIADVILEGEVQVVEQLG
Template Known Secondary structure 

TT
SSTT


B

TT

TT

GGG
B
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S
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   238.240.........250.........260.........270.........280.........290.. .......300.........310.
 
   308.310.........320.........330.........340.........350
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Query Sequence  GQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSI
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Template Sequence  NETQIHIQIPSIRQNLVYRQN. . DVVLVEEGATFAIGLPPERC
Template Known Secondary structure  S
TT
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TT


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   312.......320.........330.. .......340.........350..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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