|   |
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | P | C | E | I | H | P | E | D | I | D | K | N | I | D | L | G | Q | V | T | T | T | H | I | N | R | E | H | H | S | N | K | V | A | V | D | I | R | L | I | N | C | D | L | P | A | S | D | N | G | S | G | M | P | V | S | K | V | G | V | T | F | D | S | T | A | K | T | T | G | A | T | P | L | L | S | N | T | S | A |
Query Conservation |   |
  |
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|   | . | . | . | . |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   | . |
|   |   |   |   |   |
|   | . |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |
|
|   |
Template Sequence |   |
P | A | C | T | V | S | N | . |
. |
. |
. |
T | T | V | D | W | Q | D | V | E | I | Q | T | L | S | Q | N | G | N | H | E | . |
K | E | F | T | V | N | X | R | . |
C | P | Y | N | L | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
T | X | K | V | T | I | T | A | T | N | T | Y | N | N | A | I | . |
L | V | Q | N | T | S | N |
Template Known Secondary structure |   |
|
|
|  |  |
|
| . | . | . | . |
|
|
|
|
|
|
|
|
| G | G | G |
|
| T | T |
|  |  |  | . |  |  |  |  |  |  |  |  | . |
| S |
|
|
| S | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |
| S | S |  |  | T | T |  |  | . |  |
| T | T |
| B | S |
Template Predicted Secondary structure |   |
|
|  |  |  |
|
| . | . | . | . |
|  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  | . |  |  |  |  |  |  |  |  | . |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
| . |
|
|
|  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
13 | . | . | . | . | . | . | |
|
|
|
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
40 | . | . | . | . | . | . | . | |
. | . | 50 | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | |
70 | . | . | . | . | . | . |
  |
  |   |
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | |
|
|
|
. | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | E | A | T | G | V | G | V | R | L | M | D | K | N | D | . |
. |
. |
. |
G | N | I | V | L | G | S | A | A | P | D | L | D | L | D | A | S | S | S | E | Q | T | L | N | F | F | A | W | M | E | Q | I | D | N | A | V | D | V | T | A | G | E | V | T | A | N | A | T | Y | V | L | D | Y |
Query Conservation |   |
  |   |
|   |
|
|
|
|   |
|   |   |   |   |   | . | . | . | . |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |
|
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |   |
|   |   |
|   |   |
|   |
|   |
|
|
|
|
|   |
|   |
|
Template Sequence |   |
T | S | S | D | G | L | L | V | Y | L | Y | N | S | N | A | G | N | I | G | T | A | I | T | L | G | T | P | F | T | P | G | K | I | T | G | N | N | A | D | K | T | I | S | L | H | A | K | L | G | Y | K | G | N | X | Q | N | L | I | A | G | P | F | S | A | T | A | T | L | V | A | S | Y |
Template Known Secondary structure |   |
S | T | T |
|  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |
|
| T | T | S |
| B |
|
| S |
|  |  |
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
| G | G | G | B |
|
| S |
|
|
|
|
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . |
  |