Return to main results Retrieve Phyre Job Id

Job DescriptionP37909
Confidence99.84%DateThu Jan 5 11:57:47 GMT 2012
Rank9Aligned Residues128
% Identity26%Templatec3bwuF_
PDB info PDB header:chaperone, structural, membrane proteinChain: F: PDB Molecule:protein fimf; PDBTitle: crystal structure of the ternary complex of fimd (n-terminal domain,2 fimdn) with fimc and the n-terminally truncated pilus subunit fimf3 (fimft)
Resolution1.76 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3940.........50.........60.........70.........80.........90.........100.........110........
Predicted Secondary structure 















































Query SS confidence 















































































Query Sequence  EAPCEIHPEDIDKNIDLGQVTTTHINREHHSNKVAVDIRLINCDLPASDNGSGMPVSKVGVTFDSTAKTTGATPLLSNTS
Query Conservation    

 
        
  
 
               
 
 
  
                    

               
Alig confidence 













.............



















.........























Template Conservation     
 
    
  
.............
       
 
 
  
    .........  
   
 
               
Template Sequence  DNGCSVAAESTNFI. . . . . . . . . . . . . GATTPVVPFRILLSPCGNAV. . . . . . . . . SAVKVGFTGVADSHNANLLALENT
Template Known Secondary structure 








.............

B



TT
.........


B
SS
TTS



Template Predicted Secondary structure 







.............











.........












Template SS confidence 















































































   13......20...... ...30.........40...... ...50.........60.........70
 
   119120.........130.........140.........150.........160.........170.........180........
Predicted Secondary structure 

























Query SS confidence 





































































Query Sequence  AGEATGVGVRLMDKNDGNIVLGSAAPDLDLDASSSEQTLNFFAWMEQIDNAVDVTAGEVTANATYVLDYK
Query Conservation     
 



 
       
                       
          

 
   
  

 
 

Alig confidence 





































































Template Conservation     
 



 
    
  
                     
   
 
      

 
   
  

 
 

Template Sequence  VSAASGLGIQLLNEQQNQIPLNAPSSALSWTTLTPGKPNTLNFYARLMATQVPVTAGHINATATFTLEYQ
Template Known Secondary structure  TTB
BS
TT

B

TT

GGG



TTS
SSSS
B

B





Template Predicted Secondary structure 



























Template SS confidence 





































































   85....90.........100.........110.........120.........130.........140.........150....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions