Job Description P0A9E5 Confidence 99.96% Date Thu Jan 5 11:10:00 GMT 2012 Rank 14 Aligned Residues 198 % Identity 19% Template c3iwzB_ PDB info PDB header:transcription Chain: B: PDB Molecule:catabolite activation-like protein; PDBTitle: the c-di-gmp responsive global regulator clp links cell-cell signaling2 to virulence gene expression in xanthomonas campestris Resolution 2.30 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		L	N	E	H	E	L	D	Q	L	D	N	I	I	E	R	K	K	P	I	Q	K	G	Q	T	L	F	K	A	G	D	E	L	K	S	L	Y	A	I	R	S	G	T	I	K	S	Y	T	I	T	E	Q	G	D	E	Q	I	T	G	F	H	L	A	G	D	L	V	G	F	D	A	I	G	.	.	S	G	H	H	P	S
Query Conservation																																																																										.	.
Alig confidence															.																																																											.	.
Template Conservation															.
Template Sequence		L	D	A	G	T	I	E	R	F	L	A	H	S	.	H	R	R	R	Y	P	T	R	T	D	V	F	R	P	G	D	P	A	G	T	L	Y	Y	V	I	S	G	S	V	S	I	I	A	E	E	D	D	D	R	E	L	V	L	G	Y	F	G	S	G	E	F	V	G	E	M	G	L	F	I	E	S	D	T	R	E	V
Template Known Secondary structure													T	S	.							S	S						T	T	S	B										S									T	T	S										T	T				S						S			S	B			S
Template Predicted Secondary structure															.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.
Query SS confidence																											.	.	.	.	.
Query Sequence		F	A	Q	A	L	E	T	S	M	V	C	E	I	P	F	E	T	L	D	D	L	S	G	K	M	.	.	.	.	.	P	N	L	R	Q	Q	M	M	R	L	M	S	G	E	I	K	G	D	Q	D	M	I	L	L	L	S	K	K	N	A	E	E	R	L	A	A	F	I	Y	N	L	S	R	R	F	A	Q	R	G	F
Query Conservation																											.	.	.	.	.
Alig confidence																											.	.	.	.	.																																																	.
Template Conservation																																																																																.
Template Sequence		I	L	R	T	R	T	Q	C	E	L	A	E	I	S	Y	E	R	L	Q	Q	L	F	Q	T	S	L	S	P	D	A	P	R	I	L	Y	A	I	G	V	Q	L	S	K	R	L	L	D	T	T	R	K	A	S	R	L	A	F	L	D	V	T	D	R	I	V	R	T	L	H	D	L	S	K	E	P	E	A	M	.	S
Template Known Secondary structure						S	S																		T	T	T	T	T	T																													S														T	T	S	T	T			.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	R	E	F	R	L	T	M	T	R	G	D	I	G	N	Y	L	G	L	T	V	E	T	I	S	R	L	L	G	R	F	Q	K	S	G	M	L	A	V	K	G	K	Y	I	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	P	Q	G	T	Q	L	R	V	S	R	Q	E	L	A	R	L	V	G	C	S	R	E	M	A	G	R	V	L	K	K	L	Q	A	D	G	L	L	H	A	R	G	K	T	V	V	L
Template Known Secondary structure		B	T	T	B															T	S															T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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