Job Description P0A9E5 Confidence 99.97% Date Thu Jan 5 11:10:00 GMT 2012 Rank 6 Aligned Residues 214 % Identity 20% Template c2fmyB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:carbon monoxide oxidation system transcription regulator PDBTitle: co-dependent transcription factor cooa from carboxydothermus2 hydrogenoformans (imidazole-bound form) Resolution 2.20 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	S	I	S	Q	L	C	I	P	F	T	L	N	E	H	E	L	D	Q	L	D	N	I	I	E	R	K	K	P	I	Q	K	G	Q	T	L	F	K	A	G	D	E	L	K	S	L	Y	A	I	R	S	G	T	I	K	S	Y	T	I	T	E	Q	G	D	E	Q	I	T	G	F	H	L	A	G	D	L	V	G	F	D
Query Conservation
Alig confidence																										.																																																						.	.
Template Conservation																										.																																																						.	.
Template Sequence		M	R	L	T	D	T	N	L	L	E	V	L	N	S	E	E	Y	S	G	V	L	K	E	F	.	R	E	Q	R	Y	S	K	K	A	I	L	Y	T	P	N	T	E	R	N	L	V	F	L	V	K	S	G	R	V	R	V	Y	L	A	Y	E	D	K	E	F	T	L	A	I	L	E	A	G	D	I	F	C	T	.	.
Template Known Secondary structure		T		S		S	S							T	S	G	G	G	T	T	T	G	G	G		.							T	T						S	S		S	S									S									S	S										T	T					S	.	.
Template Predicted Secondary structure																										.																																																						.	.
Template SS confidence
		1005	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.		.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	S	G	H	H	P	S	F	A	Q	A	L	E	T	S	M	V	C	E	I	P	F	E	T	L	D	D	L	S	G	K	M	P	N	L	R	Q	Q	M	M	R	L	M	S	G	E	I	K	G	D	Q	D	M	I	L	L	L	S	K	K	N	A	E	E	R	L	A	A	F	I	Y	N	L	S	R	R	F	A
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	H	T	R	A	F	I	Q	A	M	E	D	T	T	I	L	Y	T	D	I	R	N	F	Q	N	I	V	V	E	F	P	A	F	S	L	N	M	V	K	V	L	G	D	L	L	K	N	S	L	T	I	I	N	G	L	V	F	K	D	A	R	L	R	L	A	E	F	L	V	Q	A	A	M	D	T	G
Template Known Secondary structure		.	.	.	.	.		S	S						S	S	S																			T																										T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							1082	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		Q	R	G	F	S	P	R	E	F	R	L	T	M	T	R	G	D	I	G	N	Y	L	G	L	T	V	E	T	I	S	R	L	L	G	R	F	Q	K	S	G	M	L	A	V	.	K	G	K	Y	I	T	I	E	N	N	D	A	L	A	Q	L	A	G
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		L	K	V	P	Q	G	I	K	L	E	L	G	L	N	T	E	E	I	A	L	M	L	G	T	T	R	Q	T	V	S	V	L	L	N	D	F	K	K	M	G	I	L	E	R	V	N	Q	R	T	L	L	L	K	D	L	Q	K	L	K	E	F	S	S
Template Known Secondary structure					T	T							S											T	S															T	T	S						T	T					S									T
Template Predicted Secondary structure
Template SS confidence
		1157	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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