Job Description P0AE22 Confidence 96.00% Date Thu Jan 5 11:22:16 GMT 2012 Rank 109 Aligned Residues 118 % Identity 25% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		P	P	M	A	V	G	F	D	I	D	D	T	V	L	F	S	S	P	G	F	W	R	G	K	K	T	F	S	P	E	S	E	D	Y	L	K	N	P	V	F	W	E	K	M	N	N	G	W	D	E	F	S	I	P	K	E	V	A	R	Q	L	I	D	M	H	V	R	R	G	D	A	I	F	F	V	T	G	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.			.	.																					.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.			.	.
Template Sequence		Q	G	K	V	A	A	F	D	L	D	G	T	L	I	T	T	R	S	G	.	.	.	.	.	.	.	.	.	.	.	.	K	V	F	P	T	S	P	S	D	W	R	I	L	Y	.	.	.	.	.	.	.	.	P	E	.	.	I	P	K	K	L	Q	E	L	A	A	E	G	Y	K	L	V	I	F	T	N	Q	X	G
Template Known Secondary structure			S							S	B	T	T	T				S	S		.	.	.	.	.	.	.	.	.	.	.	.	S	S	S		S	S	T	T					S		.	.	.	.	.	.	.	.	T	T	.	.											T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.			.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.													.	.	.	.	.	.	.	.	190	.	.	.	.	.									.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
							139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.									.	.	.	.	190	.	.
Predicted Secondary structure		.	.	.	.	.																																								.	.	.	.	.	.									.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																								.	.	.	.	.	.									.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	R	S	P	T	K	T	E	T	V	S	K	T	L	A	D	N	F	H	I	P	A	T	N	M	N	P	V	I	F	A	G	D	K	P	G	Q	N	T	K	.	.	.	.	.	.	S	Q	W	L	Q	D	K	N	.	.	.	.	.	.	.	.	I	R	I	F	Y	G	D	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																																								.	.	.	.	.	.									.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																					.	.	.	.	.															.	.	.	.	.	.									.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence		I	G	R	G	K	L	P	A	E	V	F	K	G	K	V	E	A	V	L	E	K	L	G	V	P	.	.	.	.	.	F	Q	V	L	V	A	T	H	A	G	L	N	R	K	P	V	S	G	X	W	D	H	L	Q	E	Q	A	N	E	G	I	P	I	S	V	E	D	S	V	F	V	G	D	A	A	G	R	L	A	N
Template Known Secondary structure				T	T	S	S																	T	S		.	.	.	.	.								S	S	S	S	S	S	T	T	S	T									T	T	S	S	S					S	T	T						S		S		B		T	T
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
												193	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	S	D	N	D	I	T	A	A	R	D	V	G	A	R
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	A	P	G	R	K	K	K	D	F	S	C	A	D	R	L	F	A	L	N	V	G	L	P
Template Known Secondary structure		S	S	T	T			S			S												T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions