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Job DescriptionP76027
Confidence100.00%DateThu Jan 5 12:17:33 GMT 2012
Rank42Aligned Residues240
% Identity26%Templatec3b5xB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae
Resolution5.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  ETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT
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Template Sequence  ERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA. . LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD. . . SGSIC
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   327..330.........340.........350........ .360.........370.........380.........390...... ...400.
 
   85....90.........100.........110.........120.........130.........140.........150..... ....160..
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Query Sequence  FNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKM. . PEARKRM
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Template Sequence  LDGHDVRDYKLTNLRRH. . . . FALVSQNVHLF. . . NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI
Template Known Secondary structure  TTSTTS
SSSSSTT....

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   402.......410........ .420......... 430.........440.........450.........460.........470....
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVM
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Template Sequence  GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK. . NKTVLVIAHRLSTIEQ. ADEILVV
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   475....480.........490.........500.........510.........520........ .530.........540.... .....550.
 
   243......250.........
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Query Sequence  YAGRTMEYGNARDVFYQ
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Template Sequence  DEGEIIERGRHADLLAQ
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   552.......560........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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