Job Description P76027 Confidence 100.00% Date Thu Jan 5 12:17:33 GMT 2012 Rank 59 Aligned Residues 247 % Identity 21% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	T	A	T	V	P	L	A	Q	Q	Q	A	D	A	L	L	N	V	K	D	L	R	V	T	F	S	T	P	D	G	D	V	T	A	V	N	D	L	N	F	S	L	R	A	G	E	T	L	G	I	V	G	E	S	G	S	G	K	S	Q	T	A	F	A	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.
Template Sequence		A	D	R	H	T	E	P	H	T	P	R	E	P	A	G	W	L	E	L	N	G	V	T	R	.	.	.	.	.	.	.	.	.	N	N	L	D	N	L	D	V	R	F	P	L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A
Template Known Secondary structure		T													S											.	.	.	.	.	.	.	.	.	T	T											S	S							S	T	T	S	S						T	T										S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510										.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
																																																																	71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	L	A	A	N	G	R	I	G	G	S	A	T	F	N	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	G	G	D	L	A	Q	I	T	R	L	V	R	V	D	Q	K	P	I	G	R	T	P	R	S	N	M	A	T	Y	T	G	L	F	D	Q	V	R	K	L	F	A	A	T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M	V	P	S
Template Known Secondary structure					S	S	G	G	G									S	S		S		S	S	T	T								T	T								T	T	S	S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	I	L	N	L	P	E	H	E	L	N	K	L	R	A	E	Q	I	S	M	I	F	Q	D	P	M	T	S	L	N	P	Y	M	R	V	G	E	Q	L	M	E	V	L	M	L	H	K	N	M	S	K	A	E	A	F	E	E	S	V	R	M	L	D	A	V	K	M	P	E	A	R	K	R	M	K	M	Y	P	H
Query Conservation
Alig confidence		.																																										.	.	.	.	.	.	.																					.	.
Template Conservation		.																																										.	.	.	.	.	.	.																					.	.
Template Sequence		.	V	Y	A	P	C	P	V	C	H	G	T	R	Y	N	A	E	T	L	E	V	E	Y	R	G	K	N	I	A	D	V	L	A	L	T	V	D	E	A	H	D	F	.	.	.	.	.	.	.	F	A	D	E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	.	.	Y	L	R	L	G	Q	P	A	T
Template Known Secondary structure		.						T	T	T	S	S	S		B		T	T	G	G	G			S	S	S								T		B								.	.	.	.	.	.	.	T	T	T															T		T	.	.	T	S	B	T	T			G	G
Template Predicted Secondary structure		.																																										.	.	.	.	.	.	.																					.	.
Template SS confidence
			660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700								.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720			.	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																							.	.	.																																																							.	.
Query SS confidence																							.	.	.																																																							.	.
Query Sequence		E	F	S	G	G	M	R	Q	R	V	M	I	A	M	A	L	L	C	R	P	K	.	.	.	L	L	I	A	D	E	P	T	T	A	L	D	V	T	V	Q	A	Q	I	M	T	L	L	N	E	L	K	R	E	F	N	T	A	I	I	M	I	T	H	D	L	V	V	V	A	G	I	C	D	K	V	L	V	M	.	.
Query Conservation																							.	.	.																																																							.	.
Alig confidence																							.	.	.																													.																.										.	.
Template Conservation																																																						.																.
Template Sequence		E	L	S	G	G	E	A	Q	R	I	K	L	A	T	E	L	R	R	S	G	R	G	G	T	V	Y	V	L	D	E	P	T	T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L	V	D	.	A	G	N	T	V	I	A	V	E	H	K	M	Q	V	V	.	A	A	S	D	W	V	L	D	I	G	P
Template Known Secondary structure		G			S															S	S	S	S									S		S	S																			.	T	T														.	T	T		S							S
Template Predicted Secondary structure																																																						.																.
Template SS confidence
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.		.	.	.	.	.	.	.	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.
						243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	Y	A	G	R	T	M	E	Y	G	N	A	R	D	V	F	Y	Q	P	V	H	P	Y	S	I	G	L	L	N	A	V
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																					.
Template Conservation																										.
Template Sequence		G	A	G	E	D	G	G	R	L	V	A	Q	G	T	P	A	E	V	A	Q	A	A	G	S	.	V	T	A	P	Y	L	R	A	A
Template Known Secondary structure		S	S	G	G	G			S						S						T		S	S		.	S	S
Template Predicted Secondary structure																										.
Template SS confidence
		808	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.		.	.	.	.	.	.	.	.	840

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions