Job Description P76027 Confidence 98.15% Date Thu Jan 5 12:17:33 GMT 2012 Rank 96 Aligned Residues 143 % Identity 20% Template c2o8dB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair Resolution 3.00 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50									.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																		.	.	.									.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence																																		.	.	.									.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		L	A	Q	Q	Q	A	D	A	L	L	N	V	K	D	L	R	V	T	F	S	T	P	D	G	D	V	T	A	V	N	D	L	.	.	.	N	F	S	L	R	A	G	E	.	.	.	.	.	.	.	.	T	L	G	I	V	G	E	S	G	S	G	K	S	Q	T	A	F	A	L	M	G	L	.	.	.	.	.	.	.
Query Conservation																																		.	.	.									.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.										.	.	.									.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.
Template Sequence		L	L	P	E	D	T	P	P	F	L	E	L	K	G	.	.	.	.	.	.	.	.	.	S	R	H	P	C	G	D	D	F	I	P	N	D	I	L	I	G	C	E	E	E	E	Q	E	N	K	A	Y	C	V	L	V	T	G	P	N	M	G	G	K	S	T	L	M	R	Q	A	G	L	L	A	V	M	A	Q	M	G
Template Known Secondary structure				T	T	T	S		S							.	.	.	.	.	.	.	.	.																					S	T	T										B			T	T	S	S																T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.
Template SS confidence
		1080	.	.	.	.	.	.	.	.	.	1090	.	.	.										.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150
				73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	A	A	N	G	R	I	G	G	S	A	T	F	N	G	R	E	I	L	N	L	P	E	H	E	L	N	K	L	R	A	E	Q	I	S	M	I	F	Q	D	P	M	T	S	L	N	P	Y	M	R	V	G	E	Q	L	M	E	V	L	M	L	H	K	N	M	S	K	A	E	A	F	E	E	S	V	R	M	L
Query Conservation		.	.
Alig confidence		.	.					.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	Y	V	P	A	E	.	.	.	V	C	R	L	T	P	I	D	R	V	F	T	R	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				B	S	S	S	.	.	.								S	B							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1158	.	1160	.	.	.				.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		D	A	V	K	M	P	E	A	R	K	R	M	K	M	Y	P	H	E	F	S	G	G	M	R	Q	R	V	M	I	A	M	A	L	L	C	R	P	K	L	L	I	A	D	E	P	T	T	A	L	D	V	T	V	Q	A	Q	I	M	.	T	L	L	N	E	L	K	R	E	F	N	T	A	I	I	M	I	T	H	D	L
Query Conservation																																																												.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.																																			.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	F	V	E	L	.	.	.	.	.	S	E	T	A	S	I	L	M	H	A	T	A	H	S	L	V	L	V	D	E	L	G	R	G	T	A	T	F	D	G	T	A	I	A	N	A	V	V	K	E	L	A	E	T	I	K	C	R	T	L	F	S	T	H	Y	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.												T	T								S		T	T	S																			T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template SS confidence
														1188	.	1190	.	.	.	.						.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250
		230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	V	A	G	I	C	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	V	E	D	Y	S	Q	N
Template Known Secondary structure							T	S	S
Template Predicted Secondary structure
Template SS confidence
		1251	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions