Job Description P76027 Confidence 95.64% Date Thu Jan 5 12:17:33 GMT 2012 Rank 366 Aligned Residues 159 % Identity 16% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	L	N	F	S	L	R	A	G	E	T	L	G	I	V	G	E	S	G	S	G	K	S	Q	T	A	F	A	L	M	G	L	L	A	A	N	G	R	I	G	G	S	A	T	F	N	G	R	E	I	L	N	L	P	E	H	E	L	N	K	L	R	A	E	Q	I	S	M	I	F	Q	D	P	M	T	S	L	N	P
Query Conservation
Alig confidence																																								.	.
Template Conservation																																								.	.
Template Sequence		Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	.	.	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P
Template Known Secondary structure						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	.	.	S					B						S	S	S		S											T	T							S	S				T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	R	V	G	E	Q	L	M	E	V	L	M	L	H	K	N	M	S	K	A	E	A	F	E	E	S	V	R	M	L	D	A	V	K	M	P	E	A	R	K	R	M	K	M	Y	P	H	E	F	S	G	G	M	R	Q	R	V	M	I	A	M	A	L	L	C	R	P	K	L	L	I	A	D	E	P	T	T	A	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Sequence		V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	.	.	.	.	.	.	.	.	.	.	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	.	.	.	.	.	.	.	.	.	.	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	.	.	.	.	.	.
Template Known Secondary structure		T													T	T		S		.	.	.	.	.	.	.	.	.	.										S	S					.	.	.	.	.	.	.	.	.	.														S								.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.											.	.	.	190	.	.	.	.	.	.	.	.	.	200	.											.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	T	V	Q	A	Q	I	M	T	L	L	N	E	L	K	R	E	F	N	T	A	I	I	M	I	T	H
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K
Template Known Secondary structure		.	T	T	T	G	G	G	G									T	T		S	S
Template Predicted Secondary structure		.
Template SS confidence
			223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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