Job Description P76027 Confidence 96.47% Date Thu Jan 5 12:17:33 GMT 2012 Rank 253 Aligned Residues 151 % Identity 15% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	G	E	T	L	G	I	V	G	E	S	G	S	G	K	S	Q	T	A	F	A	L	M	G	L	L	A	A	N	G	R	I	G	G	S	A	T	F	N	G	R	E	I	L	N	L	P	E	H	E	L	N	K	L	R	A	E	Q	I	S	M	I	F	Q	D	P	M	T	S	L	N	P	Y	M	R	V	G	E	Q
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	.	.	.	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V
Template Known Secondary structure			S	S									T	T	S	S															T	.	.	.	T										S	S																T								T	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	E	V	L	M	L	H	K	N	M	S	K	A	E	A	F	E	E	S	V	R	M	L	D	A	V	K	M	P	E	A	R	K	R	M	K	M	Y	P	H	E	F	S	G	G	M	R	Q	R	V	M	I	A	M	A	L	L	C	R	P	K	L	L	I	A	D	E	P	T	T	A	L	D	V	T	V	Q	A	Q
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		E	E	K	A	R	.	.	.	.	.	.	.	.	.	.	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	.	.	.	.	.	.	.	.	.	.	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	.	.	.	.	.	.	.	A	M	T	G	Q	E
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.			T		S										S	S						.	.	.	.	.	.	.	.	.	.														S								.	.	.	.	.	.	.	S	S	S		S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.											.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.											.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	T	L	L	N	E	L	K	R	E	F	N	T	A	I	I	M	I	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V	L	T	K
Template Known Secondary structure													S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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