Job Description P76027 Confidence 94.78% Date Thu Jan 5 12:17:33 GMT 2012 Rank 469 Aligned Residues 88 % Identity 17% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	G	E	T	L	G	I	V	G	E	S	G	S	G	K	S	Q	T	A	F	A	L	M	G	L	L	A	A	N	G	R	I	G	G	S	A	T	F	N	G	R	E	I	L	N	L	P	E	H	E	L	N	K	L	R	A	E	Q	I	S	M	I	F	Q	D	P	M	T	S	L	N	P	Y	M	R	V	G	E	Q
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	.	.	.	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G
Template Known Secondary structure		S	S	S								S	S	S	S	S	S	T	T	T										T	T	.	.	.	S					B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		127	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	E	V	L	M	L	H	K	N	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	I	F	V	K	N	K	M	D	I
Template Known Secondary structure								T	T		S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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