Job Description P77309 Confidence 100.00% Date Thu Jan 5 12:27:37 GMT 2012 Rank 2 Aligned Residues 285 % Identity 19% Template c3fzjC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: tsar low resolution crystal structure, tetragonal form Resolution 7.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	L	T	Q	L	E	M	F	N	A	V	A	E	A	G	S	I	T	Q	A	A	A	K	V	H	R	V	P	S	N	L	T	T	R	L	R	Q	L	E	T	E	L	G	V	D	L	F	I	R	E	N	Q	R	L	R	L	S	P	A	G	H	N	F	L	R	Y	S	Q	Q	I	L	A	L	V	D	E	A	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	L	Q	T	L	Q	A	L	I	C	I	E	E	V	G	S	L	R	A	A	A	Q	L	L	H	L	S	Q	P	A	L	S	A	A	I	Q	Q	L	E	D	E	L	K	A	P	L	L	V	R	T	K	R	G	V	S	L	T	S	F	G	Q	A	F	M	K	H	A	R	L	I	V	T	E	S	R	R	A	Q	E
Template Known Secondary structure																	S									T	T																		T	S		S					S	S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		81	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.
Predicted Secondary structure					.	.																																																																	.	.
Query SS confidence					.	.																																																																	.	.
Query Sequence		V	V	A	.	.	G	D	E	P	Q	G	L	F	S	L	G	S	L	E	S	T	A	A	V	R	I	P	A	T	L	A	E	F	N	R	R	Y	P	K	I	Q	F	S	L	S	T	G	P	S	G	T	M	L	D	G	V	L	E	G	K	L	N	A	A	F	I	D	G	P	.	.	I	N	H	T	A	I	D	G	I
Query Conservation					.	.																																																																	.	.
Alig confidence					.	.																																																																	.	.
Template Conservation
Template Sequence		E	I	G	Q	L	R	G	R	W	E	G	H	I	T	F	A	A	S	P	A	I	A	L	A	A	L	P	L	A	L	A	S	F	A	R	E	F	P	D	V	T	V	N	V	R	D	G	M	Y	P	A	V	S	P	Q	L	R	D	G	T	L	D	F	A	L	T	A	A	H	K	H	D	I	D	T	D	L	E	A	Q
Template Known Secondary structure																									T														T	T										T	T	T	T							T	S	S	S								G	G	G	S		T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																							.	.																														.
Query SS confidence																							.	.																														.
Query Sequence		P	V	Y	R	E	E	L	M	I	V	T	P	Q	G	Y	A	P	V	T	R	A	.	.	S	Q	V	N	G	S	N	I	Y	A	F	R	A	N	C	S	Y	R	R	H	F	E	S	W	F	H	A	D	G	.	A	A	P	G	T	I	H	E	M	E	S	Y	H	G	M	L	A	C	V	I	A	G	A	G	I	A	L
Query Conservation																							.	.																														.
Alig confidence																							.	.																														.
Template Conservation
Template Sequence		P	L	Y	V	S	D	V	V	I	V	G	Q	R	Q	H	P	M	A	N	A	T	R	L	A	E	L	Q	E	C	R	W	A	F	S	S	A	P	R	G	P	G	A	I	I	R	N	A	F	A	R	Y	G	L	P	E	P	K	L	G	L	V	C	E	S	F	L	A	L	P	G	V	V	A	H	S	D	L	L	T	T
Template Known Secondary structure														T	T		T	T	T	T			S	G	G	G	G	T	T	S								T	T	S	T	T										T	T													T	T	T							T	S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		I	P	R	S	M	L	E	S	M	P	G	H	H	Q	V	E	A	W	P	L	A	E	Q	W	R	W	L	T	T	W	L	V	W	R	R	G	A	K	T	R	P	.	L	E	A	F	I	Q	L	L	D	V	P
Query Conservation																																											.
Alig confidence																																											.
Template Conservation
Template Sequence		M	P	R	T	L	Y	E	R	N	A	F	K	D	Q	L	C	S	I	P	L	Q	D	A	L	P	N	P	T	I	Y	V	L	R	R	H	D	L	P	V	T	P	A	A	A	G	L	I	R	W	I	Q	H	H
Template Known Secondary structure									S	S	T	T	G	G	G							S	S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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