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Job DescriptionP77309
Confidence99.69%DateThu Jan 5 12:27:37 GMT 2012
Rank23Aligned Residues199
% Identity17%Templatec2f7cA_
PDB info PDB header:gene regulationChain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate
Resolution2.16 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   88.90.........100.........110.........120.........130.........140.........150.........160.......
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Query Sequence  QGLFSLGSLESTAAVRIPATLAEFNRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVT
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Template Sequence  SQTLRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRRIVLHKEQLKLAI
Template Known Secondary structure 


GGGGGTT
TTS

TTS
SSS


BTT
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   8990.........100.........110.........120.........130.........140.........150.........160........
 
   168.170.........180....... ..190.........200.........210.........220.........230.........
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Query Sequence  PQGYAPVTRASQVNGSNIYA. . . . . . . . FRANCSYRRHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSML
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Template Sequence  HKHHHPNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLVAAGEGVCIVPASAM
Template Known Secondary structure  TTS
TTTS
TT
B
GGGGTTS


SSSSSTTT


S
SSTS
GGGG
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   169170.........180.........190.........200.........210.........220.........230.........240........
 
   240.........250.........260.........270.........280........
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Query Sequence  ESMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLEAFIQLLDVPDSA
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Template Sequence  . . DIGVKNLLYIPILDDDAYSPISLAVRNMDHSNYIPKILACVQEVFAT
Template Known Secondary structure  ..GSS
SSB
STT
TT


T
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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