Job Description P77309 Confidence 99.62% Date Thu Jan 5 12:27:37 GMT 2012 Rank 31 Aligned Residues 204 % Identity 17% Template c2f78A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate Resolution 2.05 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	L	F	S	L	G	S	L	E	S	T	A	A	V	R	I	P	A	T	L	A	E	F	N	R	R	Y	P	K	I	Q	F	S	L	S	T	G	P	S	G	T	M	L	D	G	V	L	E	G	K	L	N	A	A	F	I	D	G	P	I	N	H	T	A	I	D	G	I	P	V	Y	R	E	E	L	M	I	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	T	I	R	I	G	F	V	G	S	L	L	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	H	P	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K	R	T	L	L	R	N	E	R	L	M	V	A	V
Template Known Secondary structure		S									G	G	G	G	G	T	T													T	T																				T	S		S					S						T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		P	Q	G	Y	A	P	V	T	R	A	S	Q	V	N	G	S	N	I	Y	A	F	.	.	.	.	.	.	.	.	R	A	N	C	S	Y	R	R	H	F	E	S	W	F	H	A	D	G	A	A	P	G	T	I	H	E	M	E	S	Y	H	G	M	L	A	C	V	I	A	G	A	G	I	A	L	I	P	R	S	M	L
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																																																			.
Template Conservation																																																																																	.
Template Sequence		H	A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G	L	V	A	A	G	E	G	I	S	L	V	P	A	S	T	.
Template Known Secondary structure			T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S	S					S	S											T	S		B					G	G	G	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	M	P	G	H	H	Q	V	E	A	W	P	L	A	E	Q	W	R	W	L	T	T	W	L	V	W	R	R	G	A	K	T	R	P	L	E	A	F	I	Q	L	L	D	V	P	D	S	A	R	Q	G	Y	Q
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	Q	S	I	Q	L	F	N	L	S	Y	V	P	L	L	D	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	E	E	S	T	Y	I	Y	S	L	Y	E	T	I	R	Q	I	Y	A	Y	E	G	F	T	E
Template Known Secondary structure		.	G	G				T	T						B			T	T											S	S																				T	T
Template Predicted Secondary structure		.
Template SS confidence
			248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions