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Job DescriptionP33026
Confidence100.00%DateThu Jan 5 11:51:02 GMT 2012
Rank2Aligned Residues366
% Identity12%Templatec2gfpA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   17..20.........30.........40.........50.........60.........70.........80.........90......
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Query Sequence  STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLAC
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Template Sequence  LLMLVLLVAVGQMAQTIYIPAIAD. MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILV. GMSIFMLAT
Template Known Secondary structure  .TTSSSTTTTTTS





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   10.........20.........30... ......40.........50.........60.........70........ .80.......
 
   97..100.........110.........120.........130.........140.........150.........160.........170......
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Query Sequence  TLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY
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Template Sequence  LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF
Template Known Secondary structure  TSS

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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   177..180.........190.........200.........210.........220.........230.........240.........250......
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Query Sequence  LSAAVAFIVCGVMVWLFLPSMRKELPLATGTIEAPRRNRRDTLLLFVICTLMWGSNSLYIINMPLFIINELHLPEKLAGV
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Template Sequence  LLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSI
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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   257..260.........270.........280.........290.........300. ........310.........320.........330...
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Query Sequence  MMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVGGVCFYAGMLM. . . AHSPVILLGLQLLNAIFIGILGGIGMLYFQDL
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Template Sequence  LFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEP
Template Known Secondary structure  TTTTTTSSSSSTSSTTT
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   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
   334.....340.........350.........360.........370.........380....
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Query Sequence  MPGQAGSATTLYTNTSRVGWIIAGSVAGIVAEIWNYHAVFWFAMVMIIATL
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Template Sequence  FPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVL
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   328.330.........340.........350.........360.........370........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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