Job Description P0AG82 Confidence 100.00% Date Thu Jan 5 11:28:24 GMT 2012 Rank 3 Aligned Residues 303 % Identity 24% Template d2v3qa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.89

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.												.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		L	T	G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	V	K	Q	I	I	A	.	.	.	.	.	.	.	.	.	.	.	N	T	V	D	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence																		.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		I	N	G	G	G	A	T	L	P	Q	K	L	Y	L	T	P	.	.	.	.	D	V	L	T	A	G	F	A	P	Y	I	G	V	G	S	G	K	G	K	I	A	F	L	E	N	K	Y	N	Q	F	G	T	D	T	T	K	N	V	H	W	A	G	S	D	S	K	L	T	A	T	E	L	A	T	Y	A	A	D	K	E
Template Known Secondary structure		B						S	T	T					T	S	T	.	.	.	.	T	T	S		T	T	B																		T		G	G	G	T		S		T	T	S								S	S														T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.					.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
					92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	G	L	F	Q	F	P	T	V	I	G	G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N	I	A	V	V	R	R	A	D	G	S	G	T	S	F
Query Conservation		.	.	.
Alig confidence		.	.	.																						.	.																										.	.	.	.	.	.	.
Template Conservation																										.	.																										.	.	.	.	.	.	.
Template Sequence		P	G	W	G	K	L	I	Q	V	P	S	V	A	T	S	V	A	I	P	F	R	K	A	G	.	.	A	N	A	V	D	L	S	V	K	E	L	C	G	V	F	S	G	R	I	A	D	W	S	G	I	.	.	.	.	.	.	.	T	G	A	G	R	S	G	P	I	Q	V	V	Y	R	A	E	S	S	G	T	T	E
Template Known Secondary structure																		B		B	B					.	.	S	S															T	S			B	G	G	G	S	.	.	.	.	.	.	.	T	T	S				S	B							S	S
Template Predicted Secondary structure																										.	.																										.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190										.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																								.	.	.														.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.																								.	.	.														.	.	.	.	.	.	.	.	.	.
Query Sequence		V	F	T	S	Y	L	A	K	V	N	E	E	W	K	N	N	V	G	T	G	S	T	.	.	.	.	.	.	.	.	.	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	.	.	.	G	A	I	G	Y	V	E	Y	A	Y	A	K	Q	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.	.	.	.	.	.																								.	.	.														.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.																								.	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	T	R	F	L	N	A	K	C	T	T	E	P	G	T	F	A	V	T	T	T	F	A	N	S	Y	S	L	G	L	T	P	L	A	G	A	V	A	A	T	G	S	D	G	V	M	A	A	L	N	D	T	T	V	A	E	G	R	I	T	Y	I	S	P	D	F	A	A	P	T	L	A	G	L	D	D	A	T	K
Template Known Secondary structure													S	S	S	S		B				S		G	G	G	T	B	T	T		S	T	T	S	T	T					S												T	T	S		S						B						S	S	S	G	G	G	G	G		T	T	T
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
			227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260																.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	N	N	L	A	Y	T	K	L	I	S	A	D	G	K	P	V	S	P	T	E	E	N	F	A	N	A	A	K	G	A	D	W	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	I	T	S	T	T	F	I	L	I	H	K	D	Q	K
Query Conservation		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	R	V	G	K	G	V	V	N	G	V	A	V	E	G	K	S	P	A	A	A	N	V	S	A	A	I	S	V	V	P	L	P	A	A	A	D	R	G	N	P	D	V	W	V	P	V	F	G	A	T	T	G	G	G	V	V	A	Y	P	D	S	G	Y	P	I	L	G	F	T	N	L	I	F	S	Q	C	Y	A
Template Known Secondary structure		B									T	T						B				T									T						G	G	G	T	T		G	G	G	G	S					S	S		B	T	T						S	S	S		S											S		B	S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.				.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.											.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																			.	.	.																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.																												.	.	.	.	.	.	.	.	.	.
Query Sequence		K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A	Y	K	.	.	.	T	G	A	K	Q	A	N	D	L	D	Y	A	S	L	P	D	S	V	V	E	Q	V	R	A	A	W	K	.	.	.	.	.	.	.	.	.	.	T	N	I	K	D	S	S	G	K	P
Query Conservation																			.	.	.																												.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	T	Q	T	G	Q	V	R	D	F	F	T	K	H	Y	G	T	S	A	N	N	D	A	A	I	E	A	N	A	F	V	P	L	P	S	N	W	K	A	A	V	R	A	S	F	L	T	A	S	N	A	L	S	I	G	N	T	N	V	C	N	G	K	G	R	P
Template Known Secondary structure		S															T		S	S	S	S	S							T	T		B															T	S	T	T	S	T	T	S	T	T						T	T			B
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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