Job Description P0AG82 Confidence 98.74% Date Thu Jan 5 11:28:24 GMT 2012 Rank 16 Aligned Residues 259 % Identity 14% Template d2onsa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.55

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100
Predicted Secondary structure																									.																										.	.																								.	.
Query SS confidence																									.																										.	.																								.	.
Query Sequence		E	A	S	L	T	G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	.	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	V	K	Q	I	I	A	N	.	.	T	V	D	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	E	G	L	F	Q	.	.	F	P	T	V
Query Conservation																									.																										.	.																								.	.
Alig confidence																									.																										.	.																								.	.
Template Conservation
Template Sequence		N	V	K	L	K	V	F	H	A	G	S	L	T	E	P	M	K	A	F	K	R	A	F	E	E	K	H	P	N	V	E	V	Q	T	E	A	A	G	S	A	A	T	I	R	K	V	T	E	L	G	R	K	A	D	V	I	A	T	A	D	Y	T	L	I	Q	K	M	M	Y	P	E	F	A	N	W	T	I	M	F	A
Template Known Secondary structure											G	G	G																T	T																			T	S					S					S	S									T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N	I	A	V	V	R	R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K	V	N	E	E
Query Conservation
Alig confidence												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	Q	I	V	L	A	Y	R	N	.	.	D	S	R	Y	A	D	E	I	N	S	Q	N	W	Y	E	I	L	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	V	R	F	G	F	S	N	P	N	D	D	P	C	G	Y	R	S	L	M	A	I	Q	L	A	E	L	Y
Template Known Secondary structure											T	.	.	T	S	T	T	T	T	T			T	T	T						T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								T	T	T
Template Predicted Secondary structure												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		181	.	.	.																												.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	K	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	Y	A	K	Q	N	N	L	A	Y	T	K
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	N	D	P	T	I	F	D	E	L	V	A	K	N	S	N	L	R	F	S	E	D	N	G	S	Y	V	L	R	M	P	S	S	E	R	I	E	I	N	K	S	K	I	M	I	R	S	M	E	M	E	L	I	H	L	V	E	S	G	E	L	D	Y	F	F	I	Y	K	S	V	A	K	Q	H	G	F	N	F	V	E
Template Known Secondary structure		T	T		T	T						T	G	G	G	B	S							T	T									G	G	G			B		T	T	T					S	S	G	G	G								T	S		S												T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		L	I	S	A	D	G	K	P	V	S	P	T	E	E	N	F	A	N	A	A	K	G	A	D	W	S	K	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A	Y	K	.	T	G	A	K	Q
Query Conservation																																																																												.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.																				.
Template Conservation																				.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Sequence		L	P	V	E	I	D	L	S	S	P	D	Y	A	E	L	Y	S	K	.	.	.	.	.	.	.	.	.	.	V	K	V	V	L	A	N	G	K	E	V	T	G	K	P	I	V	Y	G	I	T	I	.	.	.	.	.	P	K	N	A	E	N	R	E	L	A	V	E	F	V	K	L	V	I	S	E	E	G	Q	E	I
Template Known Secondary structure				T	T	T	S	S			G	G	G					T	T	.	.	.	.	.	.	.	.	.	.						T	T	S															.	.	.	.	.		T	T		T	T													S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.											.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.						290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		313	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	D	L	D	Y	A	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	E	L	G	Q	E	P	L
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions