Job Description P0AG82 Confidence 98.38% Date Thu Jan 5 11:28:24 GMT 2012 Rank 24 Aligned Residues 237 % Identity 14% Template d1y9ua_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.39

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																			.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	.	.	.	V	K	Q	I	I	A	N	T	V	D	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	R	E	P	K	L	I	Q	P	L	L	D	A	F	A	K	D	S	G	I	K	V	N	T	V	F	V	K	D	G	L	L	E	R	V	R	A	E	G	D	K	S	P	A	D	V	L	M	T	V	D	I	G	N	L	I	D	L	V	N	G	G	V	T	Q	K	I	Q	S	Q	T	L	D	S	V	V	P	A	N
Template Known Secondary structure			S	S		G	G	G	T																					S	S										G	G	G										S										T	T														S		G	G
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
					92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	G	L	F	Q	F	P	T	V	I	G	G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N	I	A	V	V	R	R	A	D	G	S	G	T	S	F
Query Conservation		.	.	.
Alig confidence		.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.
Template Sequence		L	R	G	A	E	G	S	W	Y	A	L	S	L	R	D	R	V	L	Y	V	E	K	D	L	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	F	R	Y	G	.	.	.	.	.	.	.	.	.	D	L	A	D	P	K	W	K	G	K	V	C	I	R	S	G	Q	H	P	Y	N	T
Template Known Secondary structure		G	B		G	G	G	S															T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				B	G	G	.	.	.	.	.	.	.	.	.	G	G	G		G	G	G	T	T							T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																		.	.	120	.	.	.										.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	T	S	Y	L	A	K	V	N	E	E	W	K	N	N	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	Y	A	K	Q	N	N	L	A	Y	T	K	L	I	S	A	D	G	K	P	V	S	P	T	E	E	N
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	V	A	A	M	I	A	H	D	G	A	E	A	T	E	K	W	L	R	G	V	K	A	N	L	A	R	K	A	A	G	G	D	R	D	V	A	R	D	I	L	G	G	I	C	D	I	G	L	A	N	A	Y	Y	V	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																											B	S	S		S		S											T	T	S		S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.		.	.	.	320	.
Predicted Secondary structure																																																													.										.
Query SS confidence																																																													.										.
Query Sequence		F	A	N	A	A	K	G	A	D	W	S	K	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A	Y	K	.	T	G	A	K	Q	A	N	D	L	.	D	Y	A	S	L
Query Conservation																																																													.										.
Alig confidence																																																	.	.	.										.										.
Template Conservation																																																	.	.	.
Template Sequence		M	K	N	A	E	P	G	T	D	A	R	K	W	G	D	A	I	K	V	V	R	P	T	F	A	G	G	T	H	V	N	I	S	G	A	A	V	A	A	H	A	P	N	K	A	N	A	.	.	.	V	K	L	L	E	Y	L	V	S	E	P	A	Q	T	L	Y	A	Q	A	N	Y	E	Y	P	V
Template Known Secondary structure					S		T	T	S								T							B					B											T	T		T	T					.	.	.								T	S											T	T				S
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions