Job Description P0AG82 Confidence 98.42% Date Thu Jan 5 11:28:24 GMT 2012 Rank 21 Aligned Residues 238 % Identity 15% Template d1xc1a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.51

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																																.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	L	T	G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	V	K	Q	I	I	A	.	.	.	.	N	T	V	D	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.																																				.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.
Template Sequence		D	I	T	V	Y	N	G	Q	H	.	.	K	E	A	A	Q	A	V	A	D	A	F	T	R	A	T	G	I	K	V	K	L	N	S	A	K	G	D	Q	L	A	G	Q	I	K	E	E	G	S	R	S	P	A	D	V	F	Y	S	E	Q	I	P	A	L	A	T	L	S	A	A	N	L	L	E	P	L	P	A	S	T
Template Known Secondary structure									S		.	.																																			T	T		T	T	S	S		S					S											T	T		B
Template Predicted Secondary structure											.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
														92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	E	G	L	F	Q	F	P	T	V	I	G	G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N	I	A	V	V	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.
Template Sequence		I	N	E	T	R	G	K	G	V	P	V	A	A	K	K	D	W	V	A	L	S	G	R	S	R	V	V	V	Y	D	T	R	K	L	S	E	K	D	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	V	L	.	.	.	.	.	.	.	.	.	N	Y	A	T	P	K	W	K	N	R	I	G	Y
Template Known Secondary structure					T			T	T	S				T	T	S																T	T	T			G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	G	G	.	.	.	.	.	.	.	.	.	G	G	S	S	G	G	G	T	T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.															.	120	.	.										.	.	.	.	.	.	.	130	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K	V	N	E	E	W	K	N	N	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	Y	A	K	Q	N	N	L	A	Y	T	K	L	I	S	A	D	G
Query Conservation
Alig confidence																																			.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	T	S	G	A	F	L	E	Q	I	V	A	I	V	K	L	K	G	E	A	A	A	L	K	W	L	K	G	L	K	E	Y	.	.	.	G	K	P	Y	A	K	N	S	V	A	L	Q	A	V	E	N	G	E	I	D	A	A	L	I	N	N	Y	Y	W	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T																															.	.	.	S				S	S										T	T	S	S	S												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.		.
Predicted Secondary structure																																																																						.										.
Query SS confidence																																																																						.										.
Query Sequence		K	P	V	S	P	T	E	E	N	F	A	N	A	A	K	G	A	D	W	S	K	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A	Y	K	.	T	G	A	K	Q	A	N	D	L	.	D
Query Conservation																																																																						.										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.										.										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	R	E	K	G	V	Q	N	V	H	T	R	L	N	F	V	R	H	R	D	P	G	A	L	V	T	Y	S	G	A	A	V	L	K	S	S	Q	N	K	D	E	A	.	.	.	K	K	F	V	A	F	L	A	G	K	E	G	Q	R	A	L	T	A	V	R	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G										T	T		G	G	G										B	T	T		S						.	.	.									S								T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template SS confidence
															200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		318	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	P	L
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions