Return to main results Retrieve Phyre Job Id

Job DescriptionP0AG82
Confidence59.61%DateThu Jan 5 11:28:24 GMT 2012
Rank75Aligned Residues249
% Identity12%Templated1elja_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.85

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30. ........40.........50.........60.........70. ........80.........90.
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Query Sequence  FAEASLTG. . AGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQII. . . ANTVDFGASDAPLSDEKLAQ. . . . . . .
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Template Sequence  IEEGKVVIWHAMQPNELEVFQSLAEEYMALPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGLLEPID
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TTTTTT
S
SGGGTT
B


T
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   92.......100.........110.........120. ........130.........140.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . EGLFQFPTVIGGVVLAVNIPGLKSGELVLD. . GKTLGDIYLGKIKKWDDEAIAKLNPG
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Template Sequence  EYVTEDLLNEFAPMAQDAMQYKGHYYALPFAAETVAIIYNKEMVSEPPKTFDEMKAIMEKYYDPANEKYGI. . . . . . . . .
Template Known Secondary structure  TT

TTB
TTT

TTT
SS

SS
BGGGTB
S
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   84.....90.........100.........110.........120.........130.........140.........150....
 
   148.150.........160.........170.........180.........190...... ...200.........210..
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Query Sequence  LKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIG. . . . . . . . . . . . . . . LGGKGNDGIAAFVQRL
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Template Conservation  ..............                
                     
     
                    
Template Sequence  . . . . . . . . . . . . . . AWPINAYFISAIAQAFGGYYFDDKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEG
Template Known Secondary structure  ..............B


STTTS

STTTT
TTSTGGGS
S


TT
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   155....160.........170.........180.........190.........200.........210.........220
 
   213......220.........230.........240.........250.........260.........270.........280.........290..
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Query Sequence  PGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWPITSTTFILIHKDQKKP
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Template Sequence  RAPMMVNGPWSINDVKKAGINFGVVPLPPIIKDGKEY. . . . . . . . . . . . . . . . . . . . . . . WPRPYGGVKLIYFAAGIKNK
Template Known Secondary structure  SSS
GGGTT





TT.......................



BTT
S
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   221........230.........240.........250....... ..260.........270.......
 
   293......300....... ..310. ........320.
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Query Sequence  EQGTEVLKFFDWAYK. TGAK. . QANDLDYASL
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Template Sequence  DAA. . . WKFAKWLTTSEESIKTLALELGYIPV
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B

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   278.280 .........290.........300......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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