Job Description P0AG82 Confidence 99.74% Date Thu Jan 5 11:28:24 GMT 2012 Rank 7 Aligned Residues 223 % Identity 21% Template d1atga_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.20

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.
Predicted Secondary structure																																																.																							.	.	.	.
Query SS confidence																																																.																							.	.	.	.
Query Sequence		S	L	T	G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	V	K	Q	I	I	A	N	.	T	V	D	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	E	G	L	F	.	.	.	.	Q	F	P	T	V	I	G
Query Conservation																																																.																							.	.	.	.
Alig confidence																																																.																							.	.	.	.
Template Conservation
Template Sequence		E	L	K	V	V	T	A	T	N	F	L	G	T	L	E	Q	L	A	G	Q	F	A	K	Q	T	G	H	A	V	V	I	S	S	G	S	S	G	P	V	Y	A	Q	I	V	N	G	A	P	Y	N	V	F	F	S	A	D	E	K	S	P	E	K	L	D	N	Q	G	F	A	L	P	G	S	R	F	T	Y	A	I	G
Template Known Secondary structure									G	G	G																																			T	T				S					S	S	S									T	T		B		T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N	I	A	V	V	R	R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K	V	N	E	E	W	K
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Sequence		K	L	V	L	W	S	A	K	P	G	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	Q	G	K	.	.	.	.	.	.	.	.	.	V	L	A	G	N	G	W	R	H	I	A	I	S	N	P	Q	I	A	P	Y	G	L	A	G	T	Q	V	L	T	H	L	G	.	.	.	.
Template Known Secondary structure								S	S	T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	G	.	.	.	.	.	.	.	.	.	G	G	G	S	S	S		S							T	T	T														T	T	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.																			.	.	.	.	.										.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	Y	A	K	Q	N	N	L	A	Y	T	K	L	I	S	A	D	G	K	P	V	S	P	T	E	E	N	F	A	N	A	A	K	G	A	D	W	S	K	T	F
Query Conservation
Alig confidence		.	.	.																																																		.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																																		.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	L	L	D	K	L	T	A	Q	E	R	I	V	E	A	N	S	V	G	Q	A	H	S	Q	T	A	S	G	A	A	D	L	G	F	V	A	L	A	Q	I	I	Q	A	A	A	K	I	P	G	S	.	.	.	.	.	H	W	F	P	P	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.								T	T						S	S										T	T	S	S	S						G	G	G	T			T	T	S			S	S		.	.	.	.	.						G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																																		.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A	Y	K	.	T	G	A	K	Q	A	N	D	L	D	Y	A	S
Query Conservation																																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.													.	.	.	.	.																			.
Template Conservation		.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	Y	Y	E	P	I	V	Q	Q	A	V	I	T	.	.	.	.	.	K	S	T	A	E	K	A	N	A	E	Q	F	M	S	W	M	K	G	P	K	A	V	A	I	I	K	A	A	G	Y	V	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	G	S										B	.	.	.	.	.	T	T		S												T	T	S										T	T		B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template SS confidence
												187	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions