Job Description P0AG82 Confidence 77.48% Date Thu Jan 5 11:28:24 GMT 2012 Rank 64 Aligned Residues 274 % Identity 10% Template c3uorB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:abc transporter sugar binding protein; PDBTitle: the structure of the sugar-binding protein male from the phytopathogen2 xanthomonas citri Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																											.																				.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.																				.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	T	G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	Q	K	E	T	.	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	V	K	Q	I	I	.	.	.	.	.	A	N	T	V	D	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.																				.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence																											.																				.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	R	F	W	A	M	G	K	E	A	E	V	V	A	E	L	V	A	D	F	E	K	Q	N	P	T	I	H	V	D	V	Q	N	I	P	M	T	A	A	H	E	K	L	L	T	A	F	A	A	D	G	L	P	D	V	C	Q	L	G	N	T	W	L	P	E	F	A	L	L	D	T	L	E	P	M	Q	P	Y	V
Template Known Secondary structure									T														T	T	T	S	T	T										T	T	T	T	T									T	T				S						G	G	G							T	T		B
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
																								92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	L	F	Q	F	P	T	V	I	G	G	V	V	L	A	V	N	I	P	.	.	.	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.																				.							.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.							.	.	.	.	.	.	.	.	.
Template Sequence		A	R	S	K	I	V	D	P	A	D	Y	F	P	G	V	W	D	T	N	L	V	D	G	T	L	Y	G	V	P	W	Y	V	D	T	R	L	L	F	Y	R	K	D	L	L	R	E	A	G	Y	S	Q	M	P	K	T	W	A	E	M	E	Q	V	M	A	.	A	I	K	R	K	V	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	S			G	G	G	B							T	T			T	T																								T	T		S	S				B										.							.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.							.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		G	L	K	L	P	S	Q	N	I	A	V	V	R	R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K	V	N	E	E	W	K	N	N	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	.	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	Y	A	K
Query Conservation																																																																.
Alig confidence		.	.	.	.	.	.																																																									.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	G	P	D	R	Y	A	I	L	M	P	L	N	E	F	E	Q	Q	L	S	F	A	L	Q	Q	D	D	R	L	L	R	D	H	D	N	Y	G	N	F	R	G	A	G	F	R	K	A	L	G	F	Y	D	N	M	Y	Q	Q	G	W	A	P	K	V	S	E	T	Q	V	S	N	V	W	Y	E	F
Template Known Secondary structure		.	.	.	.	.	.		T	T	S							T	T											T	S	S	S		S			T	T	T	T				T	T	S																T	T	S	S		S			G	G	G		S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	N	L	A	Y	T	K	L	I	S	A	D	G	K	P	V	S	P	T	E	E	N	F	A	N	A	A	K	G	A	D	W	S	K	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A
Query Conservation
Alig confidence											.	.	.	.	.	.	.																																																							.	.	.
Template Conservation											.	.	.	.	.	.	.																																																							.	.	.
Template Sequence		F	N	G	Y	Y	A	F	Y	L	.	.	.	.	.	.	.	S	G	P	W	N	V	R	E	F	K	L	R	Q	P	P	G	M	E	G	N	W	G	T	A	P	L	P	G	P	N	G	L	G	A	G	I	A	G	G	S	S	L	V	I	F	K	S	S	Q	H	K	D	A	S	.	.	.	W	K	L	I	E	Y	L
Template Known Secondary structure			T	T	S						.	.	.	.	.	.	.			T												G	G	G	T	T	S								B	T	T	S	S													B	T	T		S						.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.																																																							.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.								.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.	.
		306	.		.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure				.					.
Query SS confidence				.					.
Query Sequence		Y	K	.	T	G	A	K	.	Q	A	N	D	L	D	Y	A	S	L	P	D	S	V	V	E
Query Conservation				.					.
Alig confidence				.					.
Template Conservation
Template Sequence		S	Q	P	Q	V	Q	A	R	F	H	A	I	I	G	D	L	P	P	R	R	S	T	W	K
Template Known Secondary structure		T	S														B		S	B
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions