Job Description P0AG82 Confidence 92.71% Date Thu Jan 5 11:28:24 GMT 2012 Rank 49 Aligned Residues 280 % Identity 9% Template c3qufB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis Resolution 1.70 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																														.																								.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.																								.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	V	F	A	E	A	S	L	T	G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	.	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	V	K	Q	I	I	.	.	.	.	.	.	A	N	T	V	D	F	G	A	S	D	A	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.																								.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.												.																								.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		T	A	G	G	G	K	T	K	I	S	F	Y	S	Y	F	K	.	D	N	Q	I	G	E	V	V	K	G	F	E	K	K	N	P	D	I	T	L	D	V	Q	Y	G	Q	D	P	A	Q	Y	I	S	T	L	Q	T	R	L	A	G	G	K	P	P	T	I	F	N	L	T	X	D	N	R	T	D	V	X	K	S	G	A
Template Known Secondary structure			G	G	G										S	S		.																T	T									S	S														S	S	S			S						T	T	T								T
Template Predicted Secondary structure																		.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
				83	.	.	.	.	.	.	90	.														.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		.	.	P	L	S	D	E	K	L	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	L	F	Q	F	P	T	V	I	G	G	V	V	L	A	V	N	I	P	.	.	.	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L
Query Conservation		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.																				.							.	.	.	.	.	.	.
Template Conservation																																																																				.							.	.	.	.	.	.	.
Template Sequence		A	L	D	I	S	G	E	D	F	L	D	G	I	D	D	T	N	F	A	L	F	Q	Q	D	G	K	T	Y	G	X	P	V	S	A	W	V	G	A	F	F	Y	N	K	D	I	L	K	K	A	G	Y	D	K	F	P	K	T	W	D	E	F	I	E	X	G	K	.	K	I	N	S	N	G	.	.	.	.	.	.	.
Template Known Secondary structure		B				T	T		G	G	G	T	T	B		G	G	G	G	G	G	G			T	T					B																			T	T		S	S			S	B										.					T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.							.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	G	L	K	L	P	S	Q	N	I	A	V	V	R	R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K	V	N	E	E	W	K	N	N	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	Y	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																																												.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																																												.	.	.	.
Template Sequence		.	.	.	.	.	.	.	S	T	A	F	L	E	D	F	N	T	Q	I	A	G	S	F	T	G	L	L	A	S	Y	Y	G	E	Q	G	K	S	G	D	L	D	A	D	I	W	S	G	K	S	T	F	T	K	D	W	T	P	V	F	K	R	W	E	A	A	A	.	.	.	.	K	A	G	V	I	P	Q	K	S	V
Template Known Secondary structure		.	.	.	.	.	.	.	S								S	S	S	S														T	T	T			S	S	T	T						T	S	S																		.	.	.	.		T	T	S	S		G	G	G	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																												.	.	.	.
Template SS confidence
									184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	N	N	L	A	Y	T	K	L	I	S	A	D	G	K	P	V	S	P	T	E	E	N	F	A	N	A	A	K	G	A	D	W	S	K	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	S	A	D	Q	V	K	Q	E	F	V	S	G	N	L	G	V	X	R	S	G	P	W	D	L	P	D	L	Q	K	S	D	I	D	F	G	V	A	P	F	P	A	Y	S	K	E	D	G	Q	W	I	N	G	G	P	D	Q	G	F	A	I	A	S	R	A	S	D	K	E	K	A	A	A	K	K	F	L	A	Y
Template Known Secondary structure		T												T	T									G	G	G							S	S										B	S	S		T	T									S						B	T	T	S
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		305	.	.		.	.	310		.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure					.				.
Query SS confidence					.				.
Query Sequence		A	Y	K	.	T	G	A	.	K	Q	A	N	D	L	D	Y	A	S
Query Conservation					.				.
Alig confidence					.				.
Template Conservation
Template Sequence		L	N	S	E	E	G	L	E	A	F	T	S	A	A	G	T	L	S
Template Known Secondary structure			T	S												T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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